Oncorhynchus nerka (sockeye salmon): 115114175
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Entry
115114175 CDS
T07952
Name
(RefSeq) transcription initiation factor IIB isoform X1
KO
K03124
transcription initiation factor TFIIB
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115114175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115114175
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
115114175
Prokaryotic type
Archaeal type
TFB
115114175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
KIF9
RB_B
BRF2-like_C_cyclin_rpt
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
115114175
NCBI-ProteinID:
XP_029498085
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All DBs
Position
LG9b:complement(8047193..8058901)
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AA seq
318 aa
AA seq
DB search
MASTSRGDGLALPKVQCPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNE
KATKDPSRVGDAQNPLLNGGDLTTMISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAF
KEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK
EICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATYIARK
AVEQDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAD
LFPPDFKFDTPVDKLPQL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaagccgtggagacggcctggcacttcctaaggtgcagtgccccaaccac
ccagacgccatgctggtggaagactacagagcaggggatatgatctgccccgagtgtggc
cttgtagtgggtgacagggtgattgacgtcggctcagagtggaggaccttcaccaatgag
aaagccaccaaagacccgtctagagtgggcgacgcccagaacccactcctcaacggggga
gacttgaccaccatgatcagcaagggaacaggcgcggctagttttgacgagttcggcaac
tccaagtaccagaaccggcggaccatgagcagttcagaccgtgccatgcttaacgccttc
aaagagattaccaccatggccgaccggatcaacctaccaaggaatatcatagaccgaaca
aataacttatttaagcaagtgtacgaacagaagagcctgaaggggcgggccaacgacgcc
atcgcatcagcctgcctttacatcgcctgcagacaagagggcgtgcctcggacgtttaaa
gagatctgcgccgtgtcccgcatctccaagaaggagatcggccgctgcttcaagctgatc
ctcaaggccctggagaccagcgtggacctcatcaccaccggagacttcatgtcccgcttc
tgctccaacctgggcctgccgaagcaggtgcagatggcggccacctacatcgcccggaag
gccgtggagcaggacctggtgcccggcagaagccccatctctgtggccgccgccgccatc
tacatggcctcccaggcctccgctgagaagaagacccagaaagagatcggagacattgcc
ggtgtggcagacgtcacaatcagacagtcgtaccgactcatctacccccgtgctgctgac
ctcttccccccggacttcaaattcgacacccctgtggacaaactgccccagctgtga
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