Oncorhynchus nerka (sockeye salmon): 115114370
Help
Entry
115114370 CDS
T07952
Symbol
vcpip1
Name
(RefSeq) deubiquitinating protein VCIP135
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
one01002
]
115114370 (vcpip1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115114370 (vcpip1)
Enzymes [BR:
one01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
115114370 (vcpip1)
Peptidases and inhibitors [BR:
one01002
]
Cysteine peptidases
Family C64
115114370 (vcpip1)
Ubiquitin system [BR:
one04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
115114370 (vcpip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
ubiquitin
Motif
Other DBs
NCBI-GeneID:
115114370
NCBI-ProteinID:
XP_029498420
LinkDB
All DBs
Position
LG9b:18191694..18197286
Genome browser
AA seq
1185 aa
AA seq
DB search
MSLLQGSKKKDKRILSGTCPDPKCQARLFFPAYGSISIECTECGQRHEQNNLLNVEEVTD
PDVVLHNLLRNALLGVTGAPKKGTELVKVMGLSNYHCKLLSPILTRYGMDKQTGKAKLLR
EMNQGEMFDCSLLGDRAFLIEQEHVSTVGYGKDRSGSLIYLHDTLEEMKKANSNKECLIP
VHVDGDGHCLVHAVSRALVGRELFWHALRENLKQHFKQNLDRYKALFQDFIDAAEWEDII
NECDPLFIPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSASFLPGLVPEE
QCKGKDGKFNKPICIAWSSSGRNHYIPLVGIKNTLLPKLPPRLLPKAWGVPQELIKKYIK
LEQDGSCVIGGDRSLQDKYVMRLVNAMEEIFMEKHGIHPSLVADVHQYVYRRTGVIGVQP
EEVTEAARKSVMENRLHRCLICNALSELHVLPEWLAPGGKLYNLAKSTHGKLRPDKNYSF
PLNKVVCCYDPERDILIPDYKLSSLNTCNWCHGTSVRHIHGNGSVVYLDGDRTNTRSQGG
KCGCGFKHYWEGKEYDNLPEAFPITLEWGGRVVRETVYWFQYEVNVDLNSNVYDVAMKLV
TKHFPGEFGSELLVQKVVNTILHHTAKKNPDEYNPVSIDGAHAQRLTDVVETQQAVDTQP
PTKIILTGQKSKTIHKEELTVSKAERSLQQSISEQALVTQKRRTDRLKQEQKGQGRPPSP
SAAQEHSSSPATPTKSSFSPTSSKEKKIRVTTSDGRQAMLTLQAQTTFSELQRSIANEFT
MPPAQQCIRHGFPPKELFPPKDGAENEPVALQHGDRVTVEILRGPEDRKASAPSASSSHS
TLHSLSVKSDDPLTSSRMNTSRELQDNIDLEMSSLCLLATLMGEDVWSYAKKLPHLFHQG
GVFYNIVKKDMGLMDGKHCTLPHLTGKTFVYNAAEERLELCVDAAGHFPMGPDVEDLVKE
ALVQLRSEAASRSREGSPSHSLLRLGSGGVVRKKEQLQSVNAFQGKGHSLGSAPGGSPPE
HKPITRQHSSGVDLSASASKGPDLSDISEDATKELVRMAPGFVTMKDSRHLDPSMIEEQR
KKLQEMVSSIQASMDRHLREQSNAGAGIGGPAERTSGAKMSASQSAPGAGVKEASSMDVS
TAGAHGTSVEAGNKPDGKDAGSEELEEMDSQDAEHTNALEPMDHS
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgctacagggctccaagaaaaaggacaagcgtattttgtccggtacctgccca
gacccgaaatgccaggcgaggctattcttccctgcttacggttcgattagcattgaatgc
acagagtgtggccaacgccacgaacagaataatcttttaaatgtggaagaagtaactgat
ccagacgttgtgcttcacaatttgttaagaaatgccttactcggtgtcactggtgcaccg
aaaaagggaacagagctggtgaaagtgatggggctttccaactaccattgcaagctcctt
tctcctattctcacaaggtatggaatggataagcagacgggaaaagcgaaactgctgcgg
gaaatgaatcaaggagaaatgttcgactgttcacttctaggagacagggcgtttctaatt
gaacaggagcatgtatctacggttggctatggcaaggacagatccgggagcctgatatac
cttcacgacactttggaggagatgaagaaagcaaacagcaacaaagaatgcctcattcct
gttcatgtggatggagatggacattgtcttgttcatgctgtgtccagggccctggtaggc
agagaactgttctggcatgccttgagagagaatttgaaacaacatttcaaacaaaacttg
gatcgctacaaggcactctttcaggattttattgatgcagccgaatgggaggacatcatc
aacgaatgtgaccccctgtttatcccaccggagggtgtgccactgggacttcggaacatt
cacatattcggcttggccaatgtgttgcaccgccccataatcttgttagattcactgagt
ggaatgaggagctctggggattactctgcaagttttctccctgggcttgtgccggaagag
cagtgcaaaggaaaagacgggaagtttaacaagcctatatgcatcgcctggagtagctca
gggcgtaaccactacatccccctcgtcgggataaagaacacccttctccccaagctgcca
cccaggcttctccccaaggcatggggagtgccacaggagctcatcaagaagtatataaag
ctggaacaagatgggagctgtgtcatcgggggagacaggagcttacaagacaagtatgtg
atgagactggtcaatgccatggaggagatcttcatggagaagcatggaatccacccctcc
ctggtggcagacgtgcatcagtacgtttacagacggaccggtgtgatcggcgtccaaccc
gaagaggtgacggaggctgccaggaaatcagtcatggaaaaccggctacatcgctgtctg
atctgcaatgcactctctgagcttcatgttctacctgagtggctggctccaggtggtaag
ctttacaacctggctaaatccacccacgggaagctcagacctgacaagaactacagcttc
ccgctgaacaaggttgtctgctgttacgaccctgagagggacatcctcattcctgactac
aagctgagctctttgaacacatgcaactggtgccacggcacctccgtgcgccacatccat
ggcaacggctctgtggtgtatctggatggagacagaaccaacacccgttcccaggggggc
aaatgtggctgcggctttaagcactactgggagggaaaggaatacgacaatctgccagag
gctttccccatcactctggagtggggtgggcgggttgtgcgggagactgtgtactggttc
cagtatgaggttaatgtggacctgaacagcaacgtgtatgatgtcgccatgaaactggtc
accaagcatttccctggggagtttggcagtgagctcctagtgcagaaagtggtgaacacc
attttacatcacactgccaagaagaacccagacgagtataacccagtctccattgacggg
gcgcatgctcagaggctcacagacgtggtggaaacccagcaggctgttgacacacagcca
ccgactaagatcatactaactgggcagaaatcaaagaccattcacaaagaggagcttaca
gtgagtaaggcagagcggagccttcagcagagcatcagcgagcaggccctagtgacccag
aagaggaggacggatcgactgaagcaggagcagaagggacagggcaggccaccctcccca
agtgctgctcaggaacattcctcctccccagccacacccaccaaatcctccttctccccc
acttccagcaaggagaagaaaatccgtgtcaccactagcgatgggcggcaggccatgctc
actctacaggctcagaccaccttctctgagctccagaggagcattgctaatgagttcacc
atgcctccagcccagcaatgtatccgacatggattcccacccaaagaacttttccctccc
aaggatggagcagagaatgaaccggtggctctccaacacggggacagggtgactgtggag
atcctgagaggtccagaggaccgcaaggcatccgccccaagtgcttccagttcccattca
accctgcattccctctctgtgaagagtgatgatccattgacttccagcagaatgaatact
agcagagagctgcaggacaacattgaccttgagatgtcctccctctgtctcctagcaacc
ttaatgggagaagatgtctggtcatatgccaaaaaactgcctcacttattccaccaaggt
ggagttttctacaacattgtgaagaaagatatgggcctgatggatggcaagcactgcacc
ctcccacacctgactggaaagacgtttgtttacaacgcagcagaggagcgtctggagctg
tgtgtggatgcagcgggacactttcccatgggtcctgacgtggaggacctcgtcaaggag
gccctggtgcagctccgctctgaagctgcctccaggagtcgcgagggaagcccctctcac
agcctgctgaggctcgggagtggaggtgtggtgcgcaagaaggagcagctccaaagtgtc
aacgccttccagggtaagggccactccctgggcagcgccccaggcggctctccccctgaa
cacaagcccatcaccaggcagcacagcagcggggtggacctgagcgccagcgcctccaag
ggacctgacctgtctgacatctcagaggacgcgaccaaggagttggtgcgcatggctccc
ggttttgtcaccatgaaagacagccgacacctggaccctagtatgatcgaagaacagagg
aaaaaactacaggagatggtctcatccatccaggcctccatggacaggcacctgagggag
cagagcaatgcaggggcaggcattgggggccctgcagagaggacaagtggggctaagatg
agtgcttcccaatctgccccaggggcaggcgtaaaggaggcctcttctatggacgtatct
actgctggtgctcatggcacatcagtggaggcagggaacaagcctgatggaaaggatgca
gggtcagaggagctggaggaaatggatagccaggatgcagagcataccaacgccctagag
ccaatggatcattcctga
DBGET
integrated database retrieval system
