Oncorhynchus nerka (sockeye salmon): 115114557
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Entry
115114557 CDS
T07952
Name
(RefSeq) RB1-inducible coiled-coil protein 1-like isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115114557
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115114557
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115114557
03029 Mitochondrial biogenesis [BR:
one03029
]
115114557
Protein phosphatases and associated proteins [BR:
one01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115114557
Membrane trafficking [BR:
one04131
]
Autophagy
Autophagosome formation proteins
ULK complex
115114557
Mitochondrial biogenesis [BR:
one03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
115114557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
115114557
NCBI-ProteinID:
XP_029498766
LinkDB
All DBs
Position
LG9b:complement(28161748..28182813)
Genome browser
AA seq
1640 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYMNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRECLEKSCSTPAKDSDETEEEKSTASV
LCPTPTETQRSSTKLPTSVCAPGAGGSPDTAQEGSEMTDSSGLRAALQEADSPERTNPPS
FNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLSECRDTIAKLDNQNMKAIK
GLEDRLYALDQMIASCNKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMIM
LTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELMERV
RVVDALSTVPQMYCLAVVEVVRRKIFIGHYREWACALVKDGKRLYETEKYKRETFGKLFR
KSFLRNRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRLPTL
CDFEPLHQHVEMLQQLVLATQAASVDEMSRTITDLLSEQRVSCSQSAQRSTAAVTPLTTR
SNSTPGTTFTSSMTPSSLSLPGPLCQPLPGHGPTTLEDLSPDSIDAQTFDFETIGHPNMD
PVLQQAGSLDLDSLAESPESDFMSAVNEFVIENSPTPISYPTSPGMMVESLYSSVINAID
SKRMHDTTTLERENSKMAALKLSMEKYRTAAEESQTNLRSVKDDLYRHRDLLLKEQRDFG
FALKTMTIEVRNMVDTIRKREEEEHQAELLSLQQDHENQLQALMEENQVNKNIVKDMQRA
MLELEGLLEHKKKELTQLEVEREDWAEAENGHTQTARVLEQKISDQAQEVQTLAASRDSL
ASQLETLHIEIERGQQKIRQELEGAQQSHLQELEERMRHQHQAQLDTLARENQEALEHLA
TENRAKLSEVTDLHTATLTERDCQLRDLEARVIELADLRCKLEVELALKESETEEVRLLY
EEAKQGQQEANVGKATVEAETQSLSEQLAQVNRQLQARNEEYETDLAELRRLMEKDQCIS
ELVDRHEEERNQLHRELTALQQQTLDTERSRVEQLQNLQRDLDLQTVALCEDKEKQRGSS
EEQEQHLRTVICHLQVENDLLAKRIEQDTQTAQESLEKEKALKAAVPDDFKDLKQQKEEM
EKRLSDKIRQLECDLQERQSSEREAGLSEVQTEGRGSDAGAPLSLDSALQEHLQQETASL
HTQLELLERRKEEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLTEKLRKVTQQQE
KDKGLIETLSEDRAIVMQEKKQLEEDLNRLRSTALVSSAYYSPNLLALEPTGAGPGPGHC
PGPGTEVEFGAGACYSEPFLDTDRPASVAAIREDDKVDSAVEASMVTVHDNILMMSEEKQ
RILLLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDN
YVLFTVGPTLYFLHSESLTALDLKPDPMFASASGASRRPWVLGKVMEKEYCQAKKAQNRF
KVPLGTKFYRVKAVSWNKKV
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtattccaggtcaacaatggaagcactctgacatttgacacagaactt
gctgtccaaacagtgttggacctcaaacatgccatccaggtcaagtacaagattgcaacc
cagcatcaagtcctggttgtgaatggaggggagtgtatggttgcagagaggcgtgtctgc
agctacagtgctggcacggacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgactatcccgaaaaccaccttctctattgagaatgagatggagctc
aaggtggaggagtcactaatgatgccagcagtctttcacaccgttgcctcgcgaacacaa
cttgctgtggaaatgtttgaagttgccaagaaactttgctctttctgcgaacgcctggtt
catgatgaacacctccaacaccaaggctgggctgccatcatggccaacctggatgactgc
acgctgtcctatcagaagctactgtggaaatttgacacggcatacatgaattatcaacaa
gactttgaggatatcaaattgaaactgacaaaactggggacagcagtctcagtcatggcc
aagatccccctactggagtgtctgacccgccacagctacagagaatgtctagagaagtcc
tgctccactcctgccaaggactccgatgagacagaggaggagaagtctactgcctctgtg
ctctgccccacccccaccgaaacacaaaggagctccaccaagttacctacgtcagtctgt
gctccgggggcggggggctcacccgacaccgcccaggaaggcagtgagatgactgacagt
agtgggctgagggcagctcttcaggaggcagactctccagagaggaccaaccccccgtcc
ttcaacgtcaccctgctggactggatcaacgttcaagaccggcccaatgacgtggaatca
gttgtgaggaaatgctttgactccatcaatcggctcgacccacggatcattcaaccattc
ttgtcggaatgtcgagacacgatagccaaactggataatcagaacatgaaagccatcaaa
gggcttgaagacaggttatacgctctagaccaaatgatagcaagctgtaacaagttggtc
aatgaacagaaggaacttgctcagggatttctggccaatcagaagcgtgctgagaacctg
aaggatacgtccgtgctgcctgacctgtgtcttagtcacgccaaccagctgatgatcatg
ctgaccaaccaccggaagctgctggacatcaaacagaagtgtaccactgccaaacaggaa
ctggcgaacaacctacaagttcgactcaaatggtgctgctatgtgatgctgcacgcggat
caggacggagagaagctgcaggccttgctgaggctgctgacagagctgatggagagggtc
cgggtggtggacgccctcagcaccgtgcctcagatgtactgcctggccgtggtggaggtg
gtccgcaggaagatcttcataggccactacagagagtgggcctgtgctctcgtgaaggat
ggaaaacgtctctatgagactgagaagtataaaagggaaacgtttggcaagttgttcagg
aaatcttttctcagaaatcgcttgtttagaggacttgactcatggccccccacttcattt
tgcacgcgaaagcccagaaagtttgactttgagcttccagatatttcccttggtgacctg
cagtacttaaagacctgttgtcctacagaggtgcagcctttcctcaggcttccaacactg
tgtgactttgagcctttgcaccagcacgtggagatgcttcaacagttggtgctagctact
caagctgccagtgtggacgagatgtctcgaactatcactgacttactgagcgaacaaagg
gtgtcgtgcagccagagtgctcagagatccacggcagcggtgaccccgttaaccacgcgg
tccaacagcaccccggggaccacctttacctcctccatgaccccatcctctctcagtctc
ccgggcccactctgccagcccctccctggccacggccccaccacgctggaggacctgtcc
ccagacagcatcgacgcccaaaccttcgactttgagaccattggccaccccaacatggac
cctgtcctgcaacaggccggttccctggacctggactccctggctgagagccccgagtca
gacttcatgtcggccgtcaacgagtttgtgatcgaaaactcgcccacccccatcagctac
cccaccagcccagggatgatggtggagtcgctgtactcttcggtcatcaacgccatcgac
agcaagcgcatgcatgacaccaccactttagagagggagaactccaagatggccgctcta
aagctgagcatggagaagtaccgcactgctgcagaggagtcccagaccaacctgcggagc
gtcaaggatgacctgtaccgccacagagacctgctgctgaaagagcagcgagactttggc
ttcgccctgaagaccatgaccattgaggtgcgcaacatggtggacaccatccgtaagaga
gaggaggaggagcaccaggccgagctactctccctgcagcaggaccacgagaatcagctt
caggccctgatggaagagaaccaggtcaacaagaacattgtgaaagacatgcagcgggcc
atgctggaactggaggggctgctggagcacaagaagaaggagctcacccagctggaggtc
gagagagaggactgggccgaggcagagaacggacacactcaaacagccagggtcctggag
cagaagatcagcgatcaggcccaagaggtgcagaccctggctgcctccagagactccctg
gccagccagctggagacgctgcacattgagatcgagcgcggccagcagaagatccgccag
gagctggagggggcccagcagtcccacctgcaggagctggaggagaggatgaggcatcag
caccaggcccagctagataccctggcccgggagaaccaggaggccctggagcatctggcc
acagagaacagagccaagctgagcgaggtcactgacctgcacaccgccaccctgacagag
agggactgccagctgagggacctggaggcccgggtcatcgagctggctgacctgcgctgc
aagctggaggtggagctggccctgaaggagtctgagacagaggaggtgaggctgctgtac
gaggaggccaagcaggggcagcaggaggccaatgtggggaaggccactgtggaggctgag
acccagtccctcagcgaacagctagcccaggttaacaggcagctgcaggccaggaacgag
gagtacgagaccgacctggctgagctgaggaggctgatggagaaggaccagtgtatctct
gagttggtggacaggcacgaagaggagaggaaccaactccacagagagctgaccgccctg
cagcagcagaccctggacaccgagaggagccgcgttgagcagctgcagaacctccagcga
gacctggacttgcagacagtggcactgtgcgaagataaggagaagcagcgggggagttct
gaggagcaggaacaacacttaaggactgttatctgccatttgcaggtggagaacgacctg
ctcgccaaaagaatagagcaggacacacaaacagcccaagaaagtttggagaaagagaag
gccttgaaggctgctgtaccagatgactttaaagacttaaagcaacagaaggaggagatg
gagaaaagactgtcagacaaaattagacaacttgaatgtgaccttcaggaaagacaatcc
tctgaaagagaggcagggttgtcggaggtacagacagagggtcgggggtctgatgcaggg
gctcctctctccctggactctgcattgcaggagcatctgcagcaggagacagcctcgctg
cacacccagctggagctcctggagaggaggaaggaggaggagatgcagaacctcaagacc
tccctcattgcagaacaacagactaacttcaacactgtgctgacgagagagaagctgaaa
aaggaacagatcatcaatgatctgacagagaagctgcggaaggttacccagcaacaggag
aaggacaaaggtctaatagagacactgtctgaagaccgggccatcgtcatgcaggagaag
aagcagttggaggaggacctgaaccggctgcgcagcaccgccctggtgtcctcggcctac
tacagccctaacctcttagctctggagcccactggagccgggcctggacctgggcattgt
cctggtcctgggactgaagttgagtttggggctggagcctgctactcggagcccttcctt
gacacagacagaccggcctctgtggccgccatcagagaggacgacaaggtggactcagct
gtggaggccagtatggtgaccgtacacgataacatcctgatgatgtccgaggagaaacag
cggatactgttacttgagaggactttacatatgaaggaagaggaaaacaagcgcctcagt
caaagactgatgtctcaaagcatgtcctcggtgtcgtcacggcattcagagaaaatcgcc
atcagagatttccaggttggtgacttggttctgatcatcctcgatgaaaggcatgacaac
tatgtactgttcaccgtgggtcccaccctgtacttcctccactccgagtccctcactgcc
ctggacctcaaaccagatcctatgtttgcttcagcatcaggagcctcaagacggccgtgg
gttcttggaaaagtgatggagaaggaatattgccaggcgaaaaaggctcaaaaccggttc
aaagttcctttgggcaccaagttctacagggtgaaagctgtttcatggaacaagaaagta
taa
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