Oncorhynchus nerka (sockeye salmon): 115115334
Help
Entry
115115334 CDS
T07952
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03030
DNA replication
one03410
Base excision repair
one03420
Nucleotide excision repair
one03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115115334 (lig1)
03410 Base excision repair
115115334 (lig1)
03420 Nucleotide excision repair
115115334 (lig1)
03430 Mismatch repair
115115334 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
one03032
]
115115334 (lig1)
03400 DNA repair and recombination proteins [BR:
one03400
]
115115334 (lig1)
Enzymes [BR:
one01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
115115334 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
115115334 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
115115334 (lig1)
DNA replication proteins [BR:
one03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
115115334 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
115115334 (lig1)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
115115334 (lig1)
NER (nucleotide excision repair)
Other NER factors
115115334 (lig1)
MMR (mismatch excision repair)
Other MMR factors
115115334 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
115115334
NCBI-ProteinID:
XP_029499687
LinkDB
All DBs
Position
Unknown
AA seq
1005 aa
AA seq
DB search
MQRSISSFFQPKTGKEKESKKSDGPGKDEPVKDKPEPIKRPLKVQNGVHEEPDSPVKKFT
KRSRQILDSDDEAPAGIEQEPEDKAVQPKDEVFKAVTNPLSPASPVTSSASPTPGTPDTP
TSISPSGIPKRRTARKQFPKRKLDSRSGSEKEEEEQGQQNKRAKVEETQDSTENEEEAMD
VGGENSVDKPEVAQNNPEEKDTDEEKTKDGEKEKALDVKVTATEEEKGKSEKAKEKSQKA
KERSPKGQKVKERSPKGQKVKERSPKERSPKGHKSVKDGKNMKEEKVSESPQAKKAPTIS
SFFAPRKAAVKMEKPEKSEGKEKTEGKEKTEGKEKTEGKEKTGGKEKEKTAQAQYDPSRP
NYHPVDHACWSRGQRVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVIILSPEDLLCCV
YLCLNQLGPAYMGLELGVGETVLMKAVAQATGRQLDKIKAEAAEKGDLGLVAESSRNNQR
IMFQPANLIAGGVFNKLKDIGNMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLR
IGLAEQSVLSALSQAVCLSPPGQDFPPAVIDAGKGMSAEKQKAWIEEKSLLLKQTYCEMP
NYDVIIPVILKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDG
ERAQIHILENGEVRIFSRNQEDNTTKYPDIISRIHTVKNESVISCVLDTEAVAWDREKKQ
IQPFQVLITRKRKDVAAADIKVQVCVYAFDLLYLNGESLVKQPLSCRRALLKKSFQEKEG
EFVFARAIDSDNTDVIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLD
GVGDTMDLCVIGAYLGKGKRAGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYTF
LKEHILPKPRPYYRVDQSTEPDLWLDAVQVWEVKCADLSLSPIYKAGMGLCDPEKGISLR
FPRFLRIRDDKKPEEATSGGQIADLYMKQQVVQNQGDKADLEDYY
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa
aaaagtgatggaccggggaaagacgagccggtgaaagacaagccagaaccaatcaaaagg
cctctcaaagttcagaatggggtccatgaagagcctgattcgcccgtgaagaagttcact
aaacgcagtcgtcagatcttggacagtgatgatgaggctccagccggaatagaacaggag
ccagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgttaccaaccccctg
tcccccgcctctccagtgacctcatccgcctcccctacccctggaacccctgacaccccc
acttccatctcaccctccggaatacccaaacgccgcaccgcgaggaagcagttccccaag
agaaagctggacagcaggagtggcagtgaaaaggaggaggaagaacaaggacagcagaat
aaaagggcaaaggttgaggagacgcaggacagcaccgagaatgaagaggaagcgatggac
gtgggaggagagaacagtgtggataagcctgaggtggcgcagaacaacccggaggagaaa
gacacggatgaagagaagaccaaagatggagagaaggagaaagcacttgatgtgaaagtg
accgcaaccgaggaggaaaaaggaaaaagtgaaaaggctaaagagaaaagtcaaaaggct
aaagagagaagtcctaagggtcaaaaggttaaagagagaagtcctaagggtcaaaaggtt
aaagagagaagtcctaaagagagaagtcctaagggtcacaagtctgtaaaggatggcaaa
aacatgaaagaagagaaagtgtcagaaagcccccaagccaaaaaagcccccaccatcagc
agtttctttgctcccaggaaggctgctgtaaagatggagaaaccagagaagagcgaggga
aaggagaagaccgagggaaaggagaagaccgagggaaaggagaagaccgagggaaaggag
aagaccgggggaaaggagaaggagaagactgcccaggcgcagtatgacccgtccagaccc
aactaccaccctgtagaccacgcctgctggagccggggacagagggtcccgtatttggct
gttgcacgcacctttgaaaagattgaggaagattctggcagattgaggaacattgaaaca
ttatcaaatctcctacgctctgttatcatcctctctccagaggacctgctgtgctgcgtc
tacctgtgtctcaatcagctgggtcctgcttacatggggctggagctgggagtgggagaa
actgttctgatgaaggctgtcgcccaagctactgggcgacagttggacaaaatcaaggcg
gaggctgcagagaagggggacttggggttggtggctgagagttcccgtaacaaccagaga
attatgttccagccagccaatctgattgcagggggtgtgttcaacaaactgaaagacatc
gggaacatgagtgggaattctgccatgaataagaagattgacatcatcaaaggtctcttt
gtagcctgtcgtttctctgaagccagatacattgtcaggtcgctggcagggaagctgagg
attggcttggctgaacagagtgtactgtctgccctgagtcaggccgtgtgtctgtctcct
ccaggacaagacttccctccggcggtgattgacgcagggaaaggaatgagtgcagaaaaa
cagaaagcttggatagaagagaagagccttctcctcaaacagacttactgtgagatgccc
aactatgatgtcatcatcccagtcattctgaaggaggggattgatgaactccccaaccac
tgcaaactcactccaggtgtaccgttgaggcccatgctggctcaccccaccaaaggtgta
ggagaggtgatgaagagatttgatgaagccgccttcacctgcgagtacaagtatgatgga
gaacgagcacagatccatatcttggagaacggggaagtgcgtattttcagtcgcaaccag
gaggataataccaccaaatatcctgacatcatctctcgcattcatacggtaaagaatgag
tctgtgatatcctgtgtgttggacactgaggcagtagcttgggacagagagaagaaacag
atccaaccgttccaggttctcatcacacggaagagaaaggacgtggctgcagctgatatc
aaggtccaagtgtgtgtgtacgccttcgacctgctgtatctcaatggagagtctctagtg
aagcagcccttgtcatgtcgcagggctctgttgaagaaaagcttccaggagaaggaggga
gagtttgtgttcgcccgcgccatcgactcagacaacacagacgtcatagctgagttcctg
gagcaatcggttcgagactcctgtgagggactcatggtgaagactctggagaaagatgcc
acgtatgaaatcgccaagcgctctcacaactggctcaagctgaagaaggattatctggat
ggcgtgggggacacgatggatctttgtgtgatcggagcctatctggggaagggcaagaga
gcagggacctacggaggctttctgctcgcctgctacgatgaggacaatgaagagttccag
tccgtctgcaagattgggacaggtttcaaggatgaagatttggagcaacattacacattc
ttaaaggagcatattttgccaaagccccgcccctattaccgtgtggaccaatcaactgag
cccgacttgtggctcgatgcagtgcaagtatgggaagtgaagtgtgctgacctatcgctg
tcgccgatctacaaggctggcatgggattgtgtgacccagagaagggcatctctcttcgg
ttcccacgcttcctgaggatcagagatgataagaagccggaggaggccacttcaggggga
cagattgctgatttatacatgaagcagcaggttgttcagaatcagggtgacaaagctgac
ctcgaggactactactga
DBGET
integrated database retrieval system
