Oncorhynchus nerka (sockeye salmon): 115115535 Help Entry 115115535         CDS       T07952                                  Symbol nup188 Name (RefSeq) nucleoporin NUP188 homolog   KO K14311   nuclear pore complex protein Nup188 Organism one  Oncorhynchus nerka (sockeye salmon) Pathway one03013   Nucleocytoplasmic transport Brite KEGG Orthology (KO) [BR:one00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     115115535 (nup188)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:one03019]     115115535 (nup188) Messenger RNA biogenesis [BR:one03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Nuclear pore complex      115115535 (nup188) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Nup188_N-subdom_III Nup188_N Nup188_SH3-like Nup192 Motif Other DBs NCBI-GeneID:  115115535 NCBI-ProteinID:  XP_029499879 LinkDB All DBs Position Unknown AA seq 1735 aa AA seqDB search MADSEMYVRSSRELWTILLGRSALREPAQIEEELDRNWERLLQGLCYYKTPSSSAAEKLK ADKGVAQPLKDFGLRISKLLGLDQQQSVQILQCYLQEDYRGTRNTLKDVLQDERPSQALL LKIADYYYEERVCHLRCVLLLLTYFQDERHPYRVEYSNCVNKLEKDLVNNYQKQFETLFK AESPTWETHGNLMTERQVSRWFLQCLREQSLLLEILFLYYAYFEMGPGDLLSFTKMFKEQ GFGLRQTNRHLVDKSMDALVDRIGYFSCLILVEGMDIDFLHKCALEDRTEQHQFSNTPAI SREMDQMLLTFGDIPHHGPVLLAWVLLRHTLSPDESSPVIRRIGNTSLQLGVFQYLTTML QGLGGTGNNCTASTARMCIYGLLSFVITSFEEETLGSQQHLINAACEVLSAPSLAELFWE TKPTMGLGMILDSAMGMFPHKTGMLLQLLTALLSDKSTAKKVYIFLDKMSFYTEVYKTKP NDVISRDDETLWRRQAPKLLYPLGLGQTNLRMPQGVLGQVAVGEQGYVVRWDYSYSAWIL FTCEIEMLLHVVSTADVILHCERVKPILDLVHKMISTDWTVSDCLLPLTSRIYMLLQRLT SVINPPVDVIASCANCLIVLAARMPGKVWSSLHHTGFLPFASSPLTNMAQSISAEGMKAG NYGNLLVLIEQPRGEYAVTIAFLRLVTTLVKGQLGSTQDKGLIPCVLLVLKEMLPTYHKW RYNTHGVRERIGCLILELVHAILNLSPEGEASGSTPTLQSLCIYSLANTEAGQAVVNIMG VGVDTIDVVLAAQPSSGGSEGPGQILIQTVKLAFSVTNNVIRLKPPSSAVSPLEQALTQH GGHGSNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGGDAAAIRDAFLTR LQSRTEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGAEGSKEFLLGEWSCLQVVLD LIDSRQQGKYWCPPLLHRAALAFLHALWQDRRDSAISVLRTKERFWENLTTPLFGTLPAP SDITEPCVLETCAFVMKIIGLEIYYVVSGSLERSLKDALQKFSSGRRYEYWSQYVKSLVV HVAETEEEEGVHSFSETQMVISAWRMLLILSTSHSDVMQLKEDSARLKLFMDVLDGTKAA LLVPMSVPCLRLGSMMATLLLILLKQWRSVVATAPDVLAPLSLILESVLQADQQLMESTK AKVFSALISALQIQGLNGGEISQLPQLLLCVCETVQDEALALIDSTRHAAQVRDIPDDKD SMETDAVRSFQKDQRDGVCVLALHLAKELCRADEDGEHWVLVMRKIPALHSILSALELSL RSKQNLYFTEAALHLLLTLARTPQGAAAVAGAGVIQSICLPLLSVYEVPSNGASQSFSRK SQDAPCWPGVYRLSMSLMEILLKTLRYNFINEALDFVGVHQERILQCLNAVRTVQSLVCL DEADHTVGFLLQLSSFCKEWQFHLPHLLRDVQINLCYLCQTCTYLLHSRNMLHHYLQAKN GEALPSGPRAQRDPQTPSKAAAEGGGGEREEAEQKALLAVQCSLLKILSKTLATLQHFTP DCCQIILDQCMDLAEYRTLFVLSFTTSAFDADVAPSFGTLLATINVALSMLGEVEKKEPA SLSVASLASSEETQALKSLLMFTMENCFYVLISQAVRCLKDPSIAPRDKQRLKQELGSEL STLLSSLSRHFRRGAPSSPASSLLPSPQPPGAKASHEGQEPFIQLVQAFVRHIQR NT seq 5208 nt NT seq  +upstreamnt  +downstreamnt atggcggactcggagatgtatgtgaggagcagccgagagttatggactatcttactgggg agatctgcattgagggaaccggctcaaatagaggaagaactagatcgaaattgggaacga ttacttcaagggctgtgttactacaaaacacccagttcatcagcggcggaaaaactgaaa gcggacaaaggtgtggcccaaccattgaaggattttggtctgaggatcagtaaactgttg ggtctggatcaacagcagagtgtacagattttacaatgttaccttcaagaagattacaga gggacccgcaacacactgaaggatgttctgcaggatgagagaccgagccaagccctactt ctgaagatcgctgactattactacgaggagcgtgtgtgtcatctgcgatgcgtcctcctc ctgctgacgtactttcaggatgagcgacacccttacagggtggagtactccaactgtgtg aacaagctggaaaaggacctggtcaacaactaccagaagcagtttgagaccctgttcaaa gctgaatccccgacatgggagacgcatggcaacctcatgacggagaggcaggtgtcccgc tggttcctgcagtgtctgagggagcagtccctgctgctggagatcctgttcctgtactat gcctactttgagatgggtcccggagacctgctcagcttcaccaagatgttcaaggagcag ggcttcggccttcgccagaccaacagacacctggtagacaagagcatggatgccctggtt gaccgcatcgggtacttcagctgtctgatcctagtggaaggcatggacatagacttcctc cacaagtgtgccctagaggaccgcacggagcagcaccagttctccaacacccctgccatc agcagggagatggaccagatgctgctgacttttggtgacatccctcaccacgggccagtg ctgctggcctgggtcctgctgagacacaccctgagcccagatgagtccagccccgtcatc agacgcatcgggaacacctccctacaactgggggtgtttcagtacctcaccaccatgctg cagggtctgggaggcactgggaataattgcacagccagtacagccaggatgtgtatctac ggcctcctctcctttgtcattacctcctttgaagaggagacgctgggcagccaacagcat ctaataaatgcagcgtgtgaagtcctctctgcgcccagtctggctgagctcttctgggaa acgaagcccactatgggattgggaatgatcctggatagcgcaatgggaatgttcccacac aagactggtatgctgttgcagctccttactgcgctcctgtcagataagtccactgcaaag aaggtgtacattttcctggacaagatgtcgttctacaccgaggtctacaaaacaaagccc aatgacgtcatctctagagacgacgagacactgtggaggagacaagcaccaaaactcctc taccctctcggcctgggccagactaacctgcggatgcctcagggtgtgctcggtcaggtg gctgtgggggagcagggctacgtggtgcgctgggactactcctacagtgcctggatcctg ttcacctgtgagatagagatgctgctccacgttgtctctactgcagatgtgatcttgcac tgtgagcgtgtgaagcccatcctggacctggtccataagatgatcagcacagactggacc gtgtctgactgtctgctgcccctcacctcacgcatctacatgttactgcagaggttgacg tcagtcatcaaccctccagtggatgtgatagcgtcctgtgcaaactgcctcatcgtcctg gctgctaggatgcctggcaaggtttggtccagcttgcaccacactggttttctgcccttc gcctcctcccctctgaccaatatggcacagtccatcagtgctgaggggatgaaggcaggt aactacggcaacctgctggtcctgattgagcagcccagaggggagtacgctgtgaccatc gccttcctgcgcctcgtcaccaccctggtcaagggccagctgggcagcacccaggacaag ggcctcatcccctgtgtgctgctggtgctgaaggagatgctgcccacctaccacaagtgg cgctacaacacccacggagtcagagagaggattggttgtctgatcctggagttggtccat gccatcctgaacctcagtccagagggagaggctagtggcagcacgccaaccctccagtct ctgtgtatctacagtctggctaacaccgaggctggccaggcggtggttaatatcatgggg gtgggagtggacaccatagacgtggtcctggctgctcagcccagcagtggtggctcggag ggcccaggtcaaatccttatccagacggtcaagctggccttctccgtcaccaacaacgtg atccgcctcaagccaccgtcgagtgccgtttcgcccctggagcaggcgctgacgcagcac ggtggccacggcagcaacctaattgccgtgcttgccaagtacatctaccacaaacacgac ccggccctaccgcgcctcgccatccagctgctcaagaggctcgccacggtggctccgatg tctgtgtacgcctgcctgggcggtgacgcggctgccatcagggatgcctttctgactcgg ctacagagcaggacggaggacatgaggatcaaggtgatgatcctggagttcctcaccgtg gctgtggagacccagccaggcctcatcgagctcttcctcaacctggaggtcaaggacggc gcagaggggtcaaaggagtttttgctgggtgagtggagctgtctgcaggttgtgttggac ctgattgactccaggcagcaggggaagtattggtgtccccccctgctgcaccgcgccgcc ctggccttcctccacgccctgtggcaggaccgacgggatagcgcaatctctgtcctacgc accaaagagaggttttgggaaaacctgaccacgcctttgtttggaaccctacccgccccc tcagacatcactgagccttgtgttctggagacctgtgccttcgtcatgaaaatcatcggc cttgagatctactatgtagtcagtggctctctggagcgttctctgaaggatgcactgcag aagttctccagcgggcggcgctacgagtactggtcccagtatgttaagtccctggtggtc cacgtggcagagacggaggaggaagagggcgtgcactcgttctccgagacccagatggtc atctcagcctggcggatgctgctcatcctctccaccagtcattcggatgtgatgcagtta aaggaggactctgccagacttaagctcttcatggacgtgctggatgggaccaaagctgct ttgctggtgcccatgtctgtgccctgtctacgtctgggatccatgatggctactcttctg ctgatcctgcttaaacagtggagaagtgtggtggccacggcccctgatgtactggccccc ctttctctgatcctggagagtgtcctgcaggccgaccagcagctgatggagagtaccaag gccaaggtgttctctgccctcatctctgcacttcagatacagggactcaatggtggggag atctcccaactgccccagctgctgctgtgtgtgtgtgagacggtgcaggacgaggcgctg gcactgattgacagcactcgtcacgcggctcaggtgagggacatcccggatgacaaagac agcatggagactgacgccgtccgcagcttccagaaggaccagagagacggggtgtgtgtg ctggccttacacctggccaaggagctgtgtcgtgccgacgaggacggggaacactgggtt ctagtgatgaggaagattcctgctctccactctattctcagcgctctagaactcagcctg cgctccaaacagaacctctacttcaccgaggctgccctgcacctgctgctcacgctagcc cgcacaccacagggtgcagcagcagtagccggggccggcgtcatccagagtatctgtctc cctctgctcagtgtctacgaagtgccctctaacggagcctcacagagtttctcccgtaag tcccaggatgctccctgctggccgggggtgtaccgcctctctatgtccctcatggagatc ttgctcaagacgctgcgctacaacttcatcaacgaggccctcgactttgtcggagtgcac caggaacgcatactgcagtgcctgaatgcggtgcggacggtccagagtctggtgtgtctg gatgaggctgaccacacagtgggcttcctgctgcagctgtccagcttctgtaaggagtgg cagttccatctgccccatctgctccgagatgtacagatcaatctgtgttacctgtgccag acgtgcacctacctcctccatagcaggaacatgcttcatcactacctccaggctaagaat ggggaggcgctgccctccggcccccgtgcccagagagatcctcagaccccctccaaagct gcagccgaaggagggggcggggagagggaggaggcggagcagaaggccctgctggcagtg caatgcagcctgctgaagatcctcagtaagactctggccacgctgcagcacttcacccct gactgctgtcagataatactggaccagtgtatggacctggcagagtacaggaccttgttt gtgctgagcttcaccacctcggcctttgacgctgacgtggcgccctcttttggaacccta ctggcaaccatcaacgtggccctaagcatgctgggagaggtagagaagaaggagccagcc tctctgagtgtggcctccctggcctcgtcagaggaaacccaagccctcaagtctctgctg atgttcaccatggagaactgtttctacgtgctcatctcccaggccgtccgctgtctgaag gaccccagcatcgcccccagagacaaacagagactcaaacaggagcttggctctgaactg agcaccctcctctccagcctgtcccgtcacttccgccgtggcgccccctcgtccccggcc agcagcctgctgccatctccccagcccccaggcgctaaggccagccacgagggtcaggag cctttcatccagctggtgcaggccttcgtacgccacatacagaggtag

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