Oncorhynchus nerka (sockeye salmon): 115116046
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Entry
115116046 CDS
T07952
Name
(RefSeq) structure-specific endonuclease subunit SLX4-like
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
115116046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115116046
03400 DNA repair and recombination proteins [BR:
one03400
]
115116046
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
115116046
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
115116046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BTB
Motif
Other DBs
NCBI-GeneID:
115116046
NCBI-ProteinID:
XP_029500394
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MRSLPQGRNTNRSSQKSVALSKLASDLTSMVNNPQFSDVQLQVDSGEVYFTHSFMLYARC
PLLAQMVHDSGFGVQEDSMPSAQRVLLGEVPGQAVYTLLQYLYTAHCPLTHTLLPHVQEL
AARFNLEELQQLCQLYPAQTDLHRGVEGQGDQWGDYPAQEHQSGGEEEHQDQVFMELLRS
MWNEEVEEDEDRGEEGGIAMEEEGRGDGVTIEDGEANEERVNEEEMEEIYEFAATQRKRD
EGKESEKEESEEEEGGVTFFTETEEEQEAPIQAHSLAEHSDKGELTCMMSPQTKPPSLEA
DMAIGDIDTDRGNPNRIKADLNKSECRDLERSRTATVESDRTKQFESNVTSSRSVGEVST
TKSLHSSPIYDQELNASLDRSYSRLFSDSWGVYETQEEPHTSPPTQPSCHSQPHRAIQKP
SRSQPPRTMVVEGARQPELTSPPPPSSCSQPTRVRVDGGTRQTAIPTLQYSAIEIIDLSI
SPPLVPGVSALPVPGLSPGEVTDTGARVRTKGVVGRGKVPVCKEILQEKVPSNPEDLKRE
SYGPYSISVPVSPPHSTKEEPELIVLSDSSEEMEVGDLGSTSPSPPPPTRLSQNHQGYTR
ITTQSNTEPKKPTPITQSDTEPKKSSSKEKETIGGFVRDPSVSPSDQGLDPDPPGSNPGS
AGSTSLMDCSAEMSWLIPATPPLPSRRTSSTQTFSSMRRTQLFPKANSSSSSSAASVFSS
PTLPFRPSRQTSHPPRVSTHSAQTVSSISRQKSDSRGLRHSSLGLDHDDLSYQKYNSGSG
SPSKSQPKRSCLPRLTPSLSVIPPPDPSTKGTPLHNVPQPYSSTPLYSDLPKPSAPSLAS
PLLRDGEGDNGTRQRGRGLGISGSPWKRGGEGSLGLSLSDPSDPSSSPHKESLTQPRENS
GSPGQRRPSSESKYFHSPGDGETGGEKERGVREESDEIMKMEELERSVVKEEEQEEEQGE
DMERSSNSFQQSFLGMDEPPMAFDDSWGLNAGGGDTDGERSQAVCFSLRLESSGGGTSPP
RQGRRDGEIAGTSSTFTPSPLPKAYTTPSPPPPNTTTPQANPEINASLLDAEIWDDWGQE
EDEALPLSQRVNPVALAQRVAQLKTP
NT seq
3319 nt
NT seq
+upstream
nt +downstream
nt
atgagatctcttcctcaaggcagaaataccaacaggagcagccagaaatcagtggcgctg
tccaagctggcctcagacctcaccagtatggtgaacaacccccagttcagtgatgtccag
ctacaggtggacagtggggaggtgtacttcacccattcattcatgctgtatgctcgctgc
cccctgctggcgcagatggtccatgacagtggattcggggtgcaggaggacagcatgccc
tcagcccagagggtgttgttgggtgaggtaccaggccaggcggtatataccctgctccag
tacctctacacagcccactgccccctcacacacaccctgctgccacacgttcaggagctg
gcagccaggttcaacctggaggagctgcagcagctgtgccagctctacccagctcagaca
gacctccacagaggtgtagagggacagggggatcagtggggagactacccagcccaggag
caccaatctgggggagaggaggagcaccaagaccaggtcttcatggagctcctccgctcc
atgtggaatgaagaggttgaggaagatgaggacagaggagaggaaggagggattgcgatg
gaggaggaggggcgaggggatggcgtgacgatagaagatggagaggcgaacgaagaaagg
gtgaacgaagaagagatggaggagatatatgagtttgctgccactcagagaaagagggat
gaaggaaaagagagcgaaaaggaagaatcagaggaggaggagggaggagtgacatttttc
acagagacagaagaagagcaggaggctccaatccaagctcactcattggctgaacactca
gataagggtgaattaacatgcatgatgtcccctcaaacaaaacctcccagtttagaggca
gacatggctattggtgacatcgacacagaccgggggaatccaaataggataaaagctgat
ctcaacaaatcagaatgtagagatctagaacgttctagaacagccaccgtggagtcagac
agaacaaaacaatttgaatcaaacgtcacaagctcaagaagcgttggagaggtatcaacg
acaaaaagcctccactccagtccgatttacgatcaagaactaaacgctagtctagaccgt
agctacagccgcctcttctctgactcttggggggtctatgagacgcaggaggagccccac
acctccccaccaacacaaccatcctgccactcccaaccccacagggctatccagaaaccc
tcccgctcccagccccccaggaccatggtagtggagggtgcgagacagccagaactcacc
tccccacccccaccgtcctcctgctcccagcccacaagggtgagggtcgatgggggtacg
agacagacagcgatccctaccctccagtactcagccattgaaatcattgacctctccatc
agtcctcctctggtccctggtgtatccgccctacctgttcctggtttgtccccaggggaa
gtgactgacaccggggcacgagttaggacgaagggagtggtgggaagagggaaggttcct
gtgtgtaaggagatactccaagagaaggtaccgtctaatccagaggacttaaagagagag
agttatggtccgtatagtatttctgtacccgtctctcctcctcacagtaccaaagaagaa
cctgagcttatagttctgtctgactctagtgaagagatggaggtaggggatctaggatct
accagcccctctccaccaccccctactcgtctctcccagaaccaccaaggctacacccga
atcacaactcaatccaacacagaacccaagaaacccaccccgataacccaatcagacaca
gaacctaagaaatccagctcgaaggagaaagagactattggtggttttgtgagggatcct
tctgtctcaccttcagatcaaggcttagatccagatcctccaggttctaacccaggttct
gctggttctactagtctcatggactgttctgcagagatgtcttggctcatcccggccact
ccgcccctgccgtccaggaggacgagctctacccagacctttagtagcatgcgtcgcact
cagctctttcctaaggccaactcttcttcctcctcttctgcagcgtcagttttctcctct
cccaccctccctttcaggcctagccgccagacctcacacccacccagggtttctacacat
tctgcccagacagtgtcctctatttctaggcagaaatcagacagcagagggcttcggcac
tccagcttgggtctcgaccatgacgacctctcttaccagaaatacaacagtggttctgga
tccccctccaagtcccaaccaaaacgctcctgcctaccccgcctgaccccctctctctcc
gtcatccccccaccagacccctccaccaagggtactcctctccacaacgtcccccagcca
tacagctccactcccctttattcagatctacccaagccctctgctccgtctctggcctcc
cctcttctgagagacggggagggggacaacggaaccaggcagagagggagggggctgggg
atctctgggagcccatggaagagagggggagaggggtctctgggcctatccctctcggac
ccttccgacccatcctcgtccccacataaggagtcccttacccaaccgagagagaacagc
ggctcccccggacaacgccgaccatccagtgagtctaaatacttccacagcccgggagat
ggcgagacggggggagagaaagagaggggggtgagagaggaatcggatgagattatgaaa
atggaggaactggaaaggagtgtagtgaaagaggaagagcaggaggaagagcagggagaa
gacatggagaggtccagtaacagctttcaacagagcttcctcgggatggacgagccaccc
atggctttcgatgactcctggggcctaaacgcaggaggaggggacacggacggagaacga
tcccaggcagtgtgcttcagtctgaggctagagagcagcggcggtgggactagtcctcca
agacagggccggagagatggagagattgcaggaacatcctctacttttaccccttctcct
cttcctaaagcctacaccaccccctctccacctccacccaacaccactacaccccaggcc
aacccagagatcaacgctagcctcctggacgctgagatctgggacgactgggggcaggaa
gaggatgaggctcttcctctctctcagagggtgaatcctgtagctctggctcagagagtg
gcccagctcaagactccag
DBGET
integrated database retrieval system
