Oncorhynchus nerka (sockeye salmon): 115116404
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Entry
115116404 CDS
T07952
Name
(RefSeq) protocadherin-18-like isoform X1
KO
K16499
protocadherin delta 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115116404
Cell adhesion molecules [BR:
one04515
]
Cadherins
Protocadherins
115116404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_4
PAG
Motif
Other DBs
NCBI-GeneID:
115116404
NCBI-ProteinID:
XP_029500757
LinkDB
All DBs
Position
Unknown
AA seq
930 aa
AA seq
DB search
MEPGKIICVFYIRIWILLAVMALATQNVKGKTLKYQVYEEQKVGTVIARLKEDVADVLVK
LPTSVSLRFRAMQRGSTSFLSVREQDGEISIRSKIDREKLCEKNLNCSIEFDVLTLPTEH
LQLFHVEVEVLDINDNAPQFARVVIPIEISESAAVGARIPLDSASDPDVGENSLDTYSLE
PNNYFKIDIQSRTDGAKYSELVVLRELDREMQPGYELQLTASDKGVPPKSGSTLLRISVA
DSNDNSPIFEQSSYVINLLENSPVGSLLIDLNATDADDGTNAKIVYSFSSHVSPKIVETF
KINSDNGHLTLMKRVDFESATSYDIDVQAQDMGPNSMPAHCKIFIKVVDVNDNKPDISIN
LMSQGDRGKEDAAYISEAAPLDSFVALVRVEDLDSGLNGEVVCKLHGQGSFKLQKTYENN
YMILTNVSLDREKRSEFSLTVIAEDRGTPSLSTIKHFTVHVLDENDNAPRFQKGRYEVFR
SENNAPGAYLTSLLATDPDLDANSQVSYFLVENTVHGSSISTFVTIDPSNGAVYALRTFD
REDVSRISFVVQAKDAGEPSLLSNATVVLTILDENDNPPVIVVPQLWNLTADVPVSKYTE
AGSLVTAVRATDRDTGVNAELTCSITAGNEEGFFSMDPRTCEISANVSLDMFPHEFAELT
VLVSDHGSLQQTTKAVLKISLYENMEGHVQVLDQGETPLDASLIIIMSLGAICTMLLVIM
VMFAARCNREKKDTRNSYNCRVAETNHQHHPKKPSRQIHKGDITLVPTVNGTLPIRAHHR
SPSATPPMDRAPMGSRQSHHSHQSLNSLVTISSNHIPESFALELAHATPPVEQVSQLLSL
LHQGQYQPRPCFRGNKYSRSYRYALQDMDKFSLKDSGRGDSDAGDSDYDMGRESPIDRLL
GDGFSELYHMDMLHRLHPGQLHRDMRQPSW
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggaacctggaaaaataatctgcgtattttatatccgaatatggatacttctcgccgtt
atggcgctggccacgcaaaacgtcaaaggtaaaacattaaaatatcaagtttacgaggaa
cagaaggtgggcactgttattgcgcggcttaaagaagacgtggctgatgttttggtcaaa
ctcccaacttctgtgtctttgcgcttccgagccatgcagagaggtagcacgtctttccta
tccgtgcgcgagcaggacggagagatcagcatccgttccaaaatagaccgagagaagctc
tgcgagaagaacctcaactgttccattgaattcgacgttctgactcttccaacagaacac
ttgcagctcttccacgtcgaggtggaagtgttggacattaatgataacgcgccccagttc
gcccgcgtcgtaatccccatcgagatctccgagagcgcggcagttggggcgcgcattccc
ctggacagcgcgagtgaccccgacgtcggggagaactccctcgatacttactccctcgag
cccaacaactacttcaagattgacattcagagcagaacggacggggctaagtactcggag
ttggtggtgctaagggagctcgacagggagatgcagccaggttatgaacttcagctgacg
gcctccgataagggcgttccccctaaatccggttctactctcctcagaattagcgtggca
gattcaaacgacaacagtcctattttcgaacagtcttcatatgtgattaatctattggag
aattcacctgttggatctcttcttattgacctgaatgcgactgatgcagacgacggaacc
aacgccaaaatcgtctactcctttagcagtcacgtgtccccgaaaatcgtggaaacgttc
aagatcaactcggataacggccacctgacgctcatgaagcgcgtggactttgaaagcgcg
acatcatatgacatcgatgtccaagcccaggatatgggccccaactccatgccagcacac
tgcaagatcttcatcaaggtagtggacgtaaacgacaacaaaccagacatcagcatcaat
ctgatgtcccaaggggacagaggcaaggaggacgcggcctatatctccgaggccgctcca
ttggattccttcgtggccttagtaagagtggaggacctagattccggtctgaacggagag
gttgtgtgtaaactccacggccaggggagttttaaactacagaagacctacgagaacaac
tacatgatcctcactaacgtttcgctggatcgggagaagaggtcagagttcagcttgacg
gtcatcgccgaggaccgcggcacgcccagcctctcgaccatcaagcacttcaccgtgcac
gtgctggatgaaaacgacaacgctccacgcttccagaagggacgctatgaggtgttcaga
tcagagaacaatgcccctggggcctacctcacgtcgctattggcaaccgaccccgacctg
gacgccaacagccaggtgagctacttcctggtggagaacaccgttcacgggagctccatc
tccacctttgtcaccatagacccgtccaacggcgctgtttacgccctccgcacgttcgac
cgcgaggacgtcagccggatatccttcgtagtccaggccaaggacgccggggaaccctcg
ttgctgagcaacgccaccgtcgtcctgacaatcctggacgaaaacgacaacccgccggtc
atcgtggttccgcagctctggaacctcacggccgacgtccccgtctccaagtacaccgag
gccggtagcctggttacggccgtcagggcgaccgaccgagacaccggcgtcaacgcagaa
ctcacatgttcaatcactgccggcaacgaggaaggcttcttctctatggatcccagaacg
tgcgagatcagcgccaacgttagcctcgacatgtttccccacgagtttgcggagctcacc
gtcctggtcagtgaccacggttccttgcaacagaccaccaaggccgtcctaaaaatcagc
ctctatgagaacatggagggccacgtgcaggtgctggaccagggggagacgccgctcgac
gcctccctcatcatcatcatgtccctgggggccatctgcactatgctcctggtcatcatg
gtcatgttcgctgcccgctgcaaccgagaaaagaaagataccaggaactcgtacaactgc
agggtggcagagaccaaccaccagcatcacccgaagaaaccgtcgcggcagatccacaag
ggtgacatcacacttgttcccacggtgaatgggactctaccaatcagagcgcaccaccgc
tcaccctcggccacgccccccatggaccgggcgccaatgggaagccggcagagccaccac
agccaccagtcactgaatagcctggtgacgatatcgtccaatcatatcccggagagcttc
gccctggagttggcccacgctacgccacccgtcgagcaagtgtcacagcttctgtccctg
ctccatcagggccagtaccagcctagaccctgtttccgtggcaacaaatactccagaagc
tacaggtatgcattgcaggacatggacaagttcagcttgaaggacagtggtcgtggggac
agcgatgcgggggacagcgactatgatatgggacgagagtcccccatcgaccgtctgctg
ggggacggcttctctgagctctaccacatggacatgctccacagactacacccaggtcag
ttacatagagacatgagacagccatcttggtag
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