Oncorhynchus nerka (sockeye salmon): 115117200
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Entry
115117200 CDS
T07952
Name
(RefSeq) transportin-1-like
KO
K18752
transportin-1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115117200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115117200
03009 Ribosome biogenesis [BR:
one03009
]
115117200
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115117200
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
115117200
Pre-60S particles
115117200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT
HEAT_EZ
IBN_N
HEAT_GCN1
HEAT_2
TPR_IMB1
TPR_IPO5
Cnd1
TOR1L1_N
HEAT_MROH2B_C
Vac14_Fab1_bd
Arm
PDS5
TPR_DNAAF5
TTI1
UNC45-central
Adaptin_N
HEAT_Maestro
HEAT_GCN1_C
TPR_TTI1_C
Ltn1_1st
Dopey_N
RTP1_C1
MMS19_C
HEAT_DAAF5
SCD
TPR_IPO11
RRN3
INTS7_N
HEAT_GCN1_C_2
ARM_TBCD
Motif
Other DBs
NCBI-GeneID:
115117200
NCBI-ProteinID:
XP_029501530
LinkDB
All DBs
Position
LG4:8336221..8381420
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AA seq
740 aa
AA seq
DB search
MECEWKPDEQGLQQILQLLKESQSPDTSTQRSVQQRLEQLNQYPDFNNYLIFVLTKLKSE
DEATRSLSGLILKNNVKAHYQNFPNGVSDFIKSECLQNIGDSSPLIRATAGILITTIASK
GELQNWPELLPKLCLLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNVMIPKFL
QFFKHSSPKIRSHAIACVNQFIISRTQALMLHIDDFIENLFALATDEEPEVRKNVCRALV
MLLEVRMDRLLPHMHNIIEYMLQRTQDQDENVALEACEFWLTLAEQPVCKDVLCNHLLQL
IPVLVNGMKYSEIDIILLKGDVDEDDDEAIPDNEQDIRPRFHRSRTVAQQHEGDRDGIED
DDDDDDDDDLDDDDTISDWNLRKCSAAALDVLANVFRDDLLLPILPLLKELLFHPEWVIK
ESGILVLGAIAEVFPLLECLSSVATSLQSGFLPYCEPVYQRCVNLVQKTLAQAMLHQSQP
DQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFAL
LGDLTKACFQHVKPCIADFMPILGTNLNPELISVCNNATWAIGEISIQMGAEMQPYVTMV
LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK
DSAFRGICTMISVNPGGVVQDFIFFCDAVASWVNPKDDLRDMFGKILHGFKNQVGEDNWR
RFSDQFPLPLKERLAAFYGV
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcgagtggaaaccagatgagcaaggacttcagcaaattctacagcttttgaaa
gagtcccagtctcccgatacgtccactcaaagatccgtccagcaaagattggaacagctc
aaccaatacccagacttcaacaactacttgatattcgtgctaacgaagttgaaatcagaa
gatgaggcgacccgctctcttagtggtctgatcctaaagaacaatgtgaaggcccactac
cagaacttccccaatggagtgtctgacttcattaagagcgagtgtctccagaacattgga
gactcctcgcccctcatccgggccaccgcgggtatcctcatcaccaccattgcctccaaa
ggggagctgcagaactggcccgagctgttgcccaaactctgcctcctactggactctgag
gactacaacacctgtgagggggcgtttggcgctcttcagaagatctgtgaggactcagca
gagatcttggacagtgacgtgttggaccgtccgctcaacgttatgatcccaaagttcctg
cagttcttcaaacacagcagccccaagataaggtctcatgccatcgcctgcgtcaaccag
ttcatcatcagtaggactcaggccctaatgctgcacatcgacgacttcatcgagaacctg
tttgccctggcgactgatgaggagccagaggtgaggaagaacgtttgcagagctctggtc
atgctgctggaagtccgcatggaccgtctcctaccgcacatgcacaacatcatagagtac
atgctgcagaggactcaggaccaggatgagaacgtggctctggaggcctgtgagttctgg
ctgacactggctgaacagcctgtctgtaaggatgtgctgtgtaaccacctgctccagctg
attccggtgctcgtcaacgggatgaagtactccgagatcgacatcattctgctcaagggt
gatgtggacgaggatgatgatgaggccatccctgacaacgagcaggacatcaggcccagg
ttccaccgctcccgtaccgttgcccagcagcacgagggcgaccgcgatggcatcgaggac
gatgacgacgatgacgatgatgatgacctggacgatgatgacaccatctctgactggaac
ctccgtaagtgttcagcagcagcgttggacgtgttggcaaacgtgttcagagacgacctg
ctcctccccatcctgcctctcctcaaagagctcctcttccacccagagtgggtcatcaag
gagtctggtatactggtcctgggggccatcgctgaggtgttccctttactagagtgcctg
tcgtcagtagccacatctctccagagtggtttcctgccctactgtgagcctgtgtaccag
cgctgtgtcaacctggtgcagaagaccctcgctcaggccatgctccaccagtcccagcca
gaccagtacgaggctcctgataaggactttatgattgtggctctggacctgctcagtgga
ctggccgaggggttgggcggcaacatcgagcagttggttgcccgtagcaacatcctcacg
ctcatgtaccagtgcatgcaggacaaaatgccggaggtgcggcagagctcctttgctctg
ctgggtgacctgactaaagcttgtttccagcatgtaaagccatgcatcgctgatttcatg
cctatactaggcactaatctgaacccagagttgatatccgtgtgcaacaatgcaacgtgg
gcaatcggagagatatctatacaaatgggggctgagatgcagccctatgtgaccatggtg
ctgcaccagctggttgagatcatcaacaggcccaacaccccaaagaccctgctggagaac
acagcaataacaattggtcgtcttggttacgtttgtcctcaagaggtggcacccatgcta
cagcagtttataagaccctggtgcacctctctaaggaacataagagacaatgaggaaaaa
gactcagcgttccgaggcatctgcactatgatcagtgtcaaccctggaggagtggtacag
gactttatatttttctgtgatgcagttgcctcgtgggtaaatccaaaggatgatctgcga
gacatgttcggcaagatcctccatgggttcaagaaccaggtgggcgaggataactggagg
cgtttctcagaccagttcccactgcctctgaaggaacggctggcggccttctacggggtg
taa
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