Oncorhynchus nerka (sockeye salmon): 115118045
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Entry
115118045 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115118045
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115118045
09142 Cell motility
04820 Cytoskeleton in muscle cells
115118045
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115118045
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115118045
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115118045
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115118045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115118045
NCBI-ProteinID:
XP_029502439
LinkDB
All DBs
Position
Unknown
AA seq
1623 aa
AA seq
DB search
GCSGSSCEGKCDCSGVKGTKGERGFPGLQGNMGFPGMQGHEGPAGPMGPKGEYGESGTPG
MKGTRGPNGLPGFPGNPGLPGIPGQDGPPGSQGIPGCNGTKGDRGTDGQSGFPGLQGPPG
IPGLMGMKGDAGGVIGVIPLKGDKGFPGTPGLLGPNGPSGPEGPPGNQGSEGPRGFPGPP
GPKGEKGDRLSFQSEKGDKGQEGFRGPPGPPGPPGPPSQEAGGNAVLNYLPGPPGQRGDT
GDRGEKGFCIPHLNGVKGEQGLPGPRGKPGKDGENGFKGERGFPGGPGYHGTPGEKGERG
PPANGDGAPGSPGPPGLPGLQGERGFPGIQGALGLPGRHIEGPPGEKGRPGEVGQKGDRG
AEGESLRGKPGQDGLVGHPGPPGPPGDEPCDPALEKGPPGPPGPPGLQGELGQKGDQGDT
CVQCEAFGPPGLPGPQGPKGLQGYPGVAGSKGDKGVPGPAGLDGSPGNSGTRGLVGAPGA
HGEPGDIYLAPGLKGDKGLPGFVGTRGLPGVDGLPGKEGLAGLPGSKGEPAREGIKGDRG
LDGDPGFSGPPGERGPPGVPGFGRPGEPGEKGTSGQQGRLGIPGQPGVKGEPGKDVSSPG
PQGSPGPRGQSGIPGLQGDRGLQGDPGMPGFPGQKGDSGVPGIGFPGLTGPKGYSGAPGA
PGMPGEPGRSGQDGFSGKPGIPGPKGEPGRGLPGPKGSQGPPGETGFHGDKGNVGPTGIP
GQEGNTGPPGAQGIQGDPGPPGQHGGTGPPGPPGAGEPGAPGPIGPPGEPGPFGPEGVKG
DKGFPGSPGLDMPGPQGEKGDSGFPGLSGSKGLPGRPGPAGRDGFPGDPGLKGEMGVMGT
PGTPGYQGSAGSPGTPGQRGNPGVSGPRGEFGEPGPKGERGEQGLQGPPGNMSELNMGNM
KGQKGDSGDPGDPGHTGVKGYPGQAGVPGMPGKDGEPGTPGQPGEKGDTGVPGEPGSTGY
PGNKGSIGEMGYPGSVGPKGAKGIVGTTGHPGFLGTEGVKGDKGTVGLPGVGVPGPPGEK
GQLGLTGFPGNAGEKGQKGGMGVPGMPGTPGTKGDTGYIGHPGQPGRPGEKGVGGLPGST
GEPGQTGRPGEPGLQGPPGPTGEKGESGVDGIPGSSGDRGDQGFPGRGFPGTPGSSGFKG
DKGSPGFPGSPGIPGIPGTRGEKGTAGFQGSLGQPGEQGHPGPAMEGPKGDQGVPGKPGE
PGTSGVPGPAGVPGSAGGKGDKGDQGGQGGQGEQGLKGERGYSGLPGQSGLPGVDGLKGE
MGLQGVPGFPGTKGELGVFGLKGELGDRGFPGTKGNDGPPGPPGLHTFIKGESGFPGSQG
PQGPVGPSGFPGLKGQQGMTGIQGIKGDEGNPGINGLPGAKGEPGLFGPSGPRGYPGPPG
PDGVPGQVGPPGPSSMEHGFLVTRHSQSVEVPQCPEGTSLIYDGYSLLYIQGNERSHGQD
LGTAGSCLRKFSPMPFLFCNINNVCYFASRNDYSYWLTSPEPMPMNMDPITGQGIRPFIS
RCSVCEAPAMVIAVHSQNIMIPSCPNGWDSLWIGYSFVMHTSAGAEGSGQALASPGSCLE
EFRSAPFIECHGRGTCNYYANSYSFWLAAIEDNEMFTKPIPTTLKAGSLRTHISRCQVCM
KRT
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
gggtgctctgggtcatcatgtgaagggaaatgtgactgcagtggagtgaaaggaacaaag
ggtgagcgtggatttcctggtctccaaggcaacatggggttcccgggcatgcagggccat
gagggacccgctgggccgatgggccctaagggagagtatggcgagtcgggaactcccggg
atgaaaggaacacgtggtcctaatggtttgccaggcttcccaggaaacccagggcttccg
ggcatccctggacaagacggcccccctggatcgcagggtatcccagggtgcaatggaaca
aagggagatcgagggacagacggacagtctgggttccctggtctgcagggtcctcctggt
atccccggacttatgggaatgaaaggagatgcaggtggtgttattggagtcatcccactg
aaaggagataaaggattccctggaacacctggtttactgggtcccaatggaccctcgggg
cctgaaggcccaccaggaaaccagggatcagagggacccagaggtttccctggcccacct
ggccccaaaggagaaaagggggacaggctgtctttccagagtgagaagggagacaaggga
caagaagggttccgtggcccacctggcccccctggcccccccggacctccatcacaggaa
gcgggaggaaatgctgttttaaattacctcccaggaccaccgggtcagagaggagataca
ggagacagaggagagaaaggtttttgcattccacatctaaacggggtcaagggtgaacaa
gggctaccaggaccacggggaaaacctggcaaagatggagaaaatggatttaagggagag
agaggctttcctggtggccctggataccatggaacaccgggtgaaaagggagagagaggc
cctccagcaaatggtgatggtgctcctggctctcctggaccccctggcctcccaggctta
caaggagaaagaggtttccctggtattcaaggagctctgggcctaccaggcaggcacatt
gagggaccccccggagagaagggccggccaggagaggtcggtcagaagggagacagaggg
gcagaaggggagtctctcagaggaaagcctggacaagatgggcttgttggacatcctggt
cctcccggaccccctggggatgagccatgtgatccggcccttgaaaagggcccacctggg
ccccccggcccacctggactacagggggagttaggacagaaaggtgatcagggagacacg
tgtgtgcagtgcgaagccttcggcccacctggactccctggcccccaggggcccaaagga
ctgcaaggttatcctggagtggcaggcagtaaaggagacaagggggtgcctggacctgct
gggcttgatggaagccctggtaattcaggtactcgtgggttggtaggtgctccaggagcc
catggtgaacctggcgacatctacctggctccagggctgaagggggacaaaggtctgcct
ggtttcgttggaacacgaggtctacctggtgtagatggactgccagggaaagaaggacta
gcaggcctgcctggatccaaaggagaaccggccagagagggcatcaagggggaccgtggt
ctcgatggggaccctggtttctctggacccccaggagagaggggtcctcctggggtacca
gggtttggccggccgggggagcctggagagaagggtacatctggtcaacaaggccgactt
ggaatccctggacaaccaggagtgaaaggtgaaccaggtaaagatgtgagctcacctgga
ccccagggctcccccggacctcgaggacaatctggcattcctggactacaaggtgacaga
ggacttcagggagaccctggaatgccaggattccccggacagaaaggtgactcaggtgtc
cccggcattggattcccaggactaaccgggcctaaaggatactctggagctccaggagcc
cctggaatgccaggagagcctgggagatctggacaggatggtttctctggaaaaccaggc
atacctggtccaaagggtgagccaggtcggggtctacctggtcctaaaggttctcagggc
cctcccggagagacaggttttcatggagataaaggcaatgttggtccaactggtattcct
ggacaagagggaaacacaggaccacctggagctcagggaattcaaggtgaccctggcccc
cctggtcagcatggtggcactggaccccctggaccccctggagcaggagaacctggggcc
cctggaccaataggaccccctggagagccaggtcccttcggtcctgaaggtgtgaaagga
gataagggcttccctggctctcctggtctggacatgcccggcccccagggagagaaggga
gactcaggattccctggactgtctggatcaaaagggttgccaggaagacctggcccggcc
ggcagagatggattccccggagacccaggcctcaagggagagatgggagtcatgggaacg
cctggaacaccaggatatcagggttctgctgggagccctggaactcctggacagagaggc
aacccgggtgtctctgggcctaggggggagtttggtgagcctggacccaaaggagagagg
ggagagcagggtctgcagggtcctcctggcaacatgagtgagctgaacatggggaacatg
aagggacagaaaggagacagcggagacccaggtgaccctggacacactggagtgaagggt
tatccaggacaggccggagtacctggtatgccaggaaaggatggagagcccggtacacct
ggtcaaccaggtgagaaaggagacacaggtgttcctggtgagcccggcagtactgggtat
cctggaaacaaaggaagcattggagaaatgggatacccaggttctgtgggtccgaagggt
gctaaaggcattgtgggcacaacgggtcacccagggttcctgggtacagagggggtgaaa
ggagacaagggaacagtcggtttgccaggtgtcggagtgccaggaccccctggagagaag
ggtcagttgggtctgactggtttccctggtaacgcaggagagaagggtcagaagggagga
atgggagtccccgggatgccaggaacaccaggaaccaagggagacactggttacattggt
cacccaggtcagccgggtcggccaggagagaagggtgtcggtgggctgcccgggtcaaca
ggagagccaggtcaaacaggtcgaccaggtgagcctggtctgcagggtcccccaggtccg
actggagagaaaggagagtcaggagtggacggcattcctggatcatcaggagacagagga
gaccaaggttttcctggcagaggcttcccaggaacgccggggtcgtctgggtttaaaggt
gataagggtagtccaggtttcccaggttccccaggtatcccgggtatcccagggaccagg
ggagagaagggtacggcaggcttccagggctccctgggccagccaggggaacagggccac
ccaggacccgctatggaggggcccaaaggagaccaaggagtgccaggaaagcctggagaa
ccaggtaccagtggtgttccaggtcctgctggtgttcccgggagcgcgggggggaaggga
gacaagggagatcagggtggacaaggaggacagggcgagcagggcttaaagggagaacga
ggatactctggacttcctgggcaatctggccttccaggtgttgatggactgaagggagag
atgggattgcagggtgtgcctggtttcccagggacaaagggtgaattgggtgtgtttgga
ttgaaaggagagctgggagacagaggattcccaggaactaaaggtaatgatggcccccct
ggtcctcctggcctccacaccttcatcaagggagaaagcggcttcccgggtagtcagggc
cctcaggggcctgtggggccctcaggtttccctgggctgaaaggacagcaaggtatgaca
ggtattcagggtattaaaggtgacgagggaaaccctgggattaacggtctccccggagcc
aagggagaaccaggcctgtttggtccctcaggaccgagagggtatcccggaccccctgga
cctgatggtgttccgggtcaggtaggtcctcccggcccctcctccatggagcatggtttc
ctggtaaccaggcacagccaatcggtggaggttccacagtgtccagagggaacatcgctg
atctatgatggatactccctactctacatccagggcaatgagcgttcccacggacaggac
ctgggtacggctggtagctgtctgaggaagttcagtcccatgcccttcctcttctgtaac
atcaacaacgtctgttactttgcctcccgtaacgactactcctattggcttacctcccct
gagcccatgccaatgaacatggaccctatcaccggccagggcatcaggcccttcatcagc
aggtgttctgtgtgtgaggctcctgccatggtgatagcagtacacagtcagaatatcatg
atcccatcatgccccaatggctgggactcactctggattggctactccttcgtcatgcat
accagtgcaggtgctgagggctctggccaggccctggcatctcctggctcctgtctagaa
gagttccggagcgctcccttcatcgagtgtcacgggcgtggaacctgcaactactacgcc
aactcctacagcttctggctggccgccatcgaggacaatgagatgtttacgaaacccata
cccaccacgctaaaggcaggaagtctccggactcacattagccgttgccaggtgtgcatg
aagaggacatag
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integrated database retrieval system
