Oncorhynchus nerka (sockeye salmon): 115118045
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Entry
115118045 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04382
Cornified envelope formation
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115118045
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115118045
09142 Cell motility
04820 Cytoskeleton in muscle cells
115118045
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115118045
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115118045
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115118045
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115118045
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115118045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115118045
NCBI-ProteinID:
XP_029502439
LinkDB
All DBs
Position
Unknown
AA seq
1623 aa
AA seq
DB search
GCSGSSCEGKCDCSGVKGTKGERGFPGLQGNMGFPGMQGHEGPAGPMGPKGEYGESGTPG
MKGTRGPNGLPGFPGNPGLPGIPGQDGPPGSQGIPGCNGTKGDRGTDGQSGFPGLQGPPG
IPGLMGMKGDAGGVIGVIPLKGDKGFPGTPGLLGPNGPSGPEGPPGNQGSEGPRGFPGPP
GPKGEKGDRLSFQSEKGDKGQEGFRGPPGPPGPPGPPSQEAGGNAVLNYLPGPPGQRGDT
GDRGEKGFCIPHLNGVKGEQGLPGPRGKPGKDGENGFKGERGFPGGPGYHGTPGEKGERG
PPANGDGAPGSPGPPGLPGLQGERGFPGIQGALGLPGRHIEGPPGEKGRPGEVGQKGDRG
AEGESLRGKPGQDGLVGHPGPPGPPGDEPCDPALEKGPPGPPGPPGLQGELGQKGDQGDT
CVQCEAFGPPGLPGPQGPKGLQGYPGVAGSKGDKGVPGPAGLDGSPGNSGTRGLVGAPGA
HGEPGDIYLAPGLKGDKGLPGFVGTRGLPGVDGLPGKEGLAGLPGSKGEPAREGIKGDRG
LDGDPGFSGPPGERGPPGVPGFGRPGEPGEKGTSGQQGRLGIPGQPGVKGEPGKDVSSPG
PQGSPGPRGQSGIPGLQGDRGLQGDPGMPGFPGQKGDSGVPGIGFPGLTGPKGYSGAPGA
PGMPGEPGRSGQDGFSGKPGIPGPKGEPGRGLPGPKGSQGPPGETGFHGDKGNVGPTGIP
GQEGNTGPPGAQGIQGDPGPPGQHGGTGPPGPPGAGEPGAPGPIGPPGEPGPFGPEGVKG
DKGFPGSPGLDMPGPQGEKGDSGFPGLSGSKGLPGRPGPAGRDGFPGDPGLKGEMGVMGT
PGTPGYQGSAGSPGTPGQRGNPGVSGPRGEFGEPGPKGERGEQGLQGPPGNMSELNMGNM
KGQKGDSGDPGDPGHTGVKGYPGQAGVPGMPGKDGEPGTPGQPGEKGDTGVPGEPGSTGY
PGNKGSIGEMGYPGSVGPKGAKGIVGTTGHPGFLGTEGVKGDKGTVGLPGVGVPGPPGEK
GQLGLTGFPGNAGEKGQKGGMGVPGMPGTPGTKGDTGYIGHPGQPGRPGEKGVGGLPGST
GEPGQTGRPGEPGLQGPPGPTGEKGESGVDGIPGSSGDRGDQGFPGRGFPGTPGSSGFKG
DKGSPGFPGSPGIPGIPGTRGEKGTAGFQGSLGQPGEQGHPGPAMEGPKGDQGVPGKPGE
PGTSGVPGPAGVPGSAGGKGDKGDQGGQGGQGEQGLKGERGYSGLPGQSGLPGVDGLKGE
MGLQGVPGFPGTKGELGVFGLKGELGDRGFPGTKGNDGPPGPPGLHTFIKGESGFPGSQG
PQGPVGPSGFPGLKGQQGMTGIQGIKGDEGNPGINGLPGAKGEPGLFGPSGPRGYPGPPG
PDGVPGQVGPPGPSSMEHGFLVTRHSQSVEVPQCPEGTSLIYDGYSLLYIQGNERSHGQD
LGTAGSCLRKFSPMPFLFCNINNVCYFASRNDYSYWLTSPEPMPMNMDPITGQGIRPFIS
RCSVCEAPAMVIAVHSQNIMIPSCPNGWDSLWIGYSFVMHTSAGAEGSGQALASPGSCLE
EFRSAPFIECHGRGTCNYYANSYSFWLAAIEDNEMFTKPIPTTLKAGSLRTHISRCQVCM
KRT
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
gggtgctctgggtcatcatgtgaagggaaatgtgactgcagtggagtgaaaggaacaaag
ggtgagcgtggatttcctggtctccaaggcaacatggggttcccgggcatgcagggccat
gagggacccgctgggccgatgggccctaagggagagtatggcgagtcgggaactcccggg
atgaaaggaacacgtggtcctaatggtttgccaggcttcccaggaaacccagggcttccg
ggcatccctggacaagacggcccccctggatcgcagggtatcccagggtgcaatggaaca
aagggagatcgagggacagacggacagtctgggttccctggtctgcagggtcctcctggt
atccccggacttatgggaatgaaaggagatgcaggtggtgttattggagtcatcccactg
aaaggagataaaggattccctggaacacctggtttactgggtcccaatggaccctcgggg
cctgaaggcccaccaggaaaccagggatcagagggacccagaggtttccctggcccacct
ggccccaaaggagaaaagggggacaggctgtctttccagagtgagaagggagacaaggga
caagaagggttccgtggcccacctggcccccctggcccccccggacctccatcacaggaa
gcgggaggaaatgctgttttaaattacctcccaggaccaccgggtcagagaggagataca
ggagacagaggagagaaaggtttttgcattccacatctaaacggggtcaagggtgaacaa
gggctaccaggaccacggggaaaacctggcaaagatggagaaaatggatttaagggagag
agaggctttcctggtggccctggataccatggaacaccgggtgaaaagggagagagaggc
cctccagcaaatggtgatggtgctcctggctctcctggaccccctggcctcccaggctta
caaggagaaagaggtttccctggtattcaaggagctctgggcctaccaggcaggcacatt
gagggaccccccggagagaagggccggccaggagaggtcggtcagaagggagacagaggg
gcagaaggggagtctctcagaggaaagcctggacaagatgggcttgttggacatcctggt
cctcccggaccccctggggatgagccatgtgatccggcccttgaaaagggcccacctggg
ccccccggcccacctggactacagggggagttaggacagaaaggtgatcagggagacacg
tgtgtgcagtgcgaagccttcggcccacctggactccctggcccccaggggcccaaagga
ctgcaaggttatcctggagtggcaggcagtaaaggagacaagggggtgcctggacctgct
gggcttgatggaagccctggtaattcaggtactcgtgggttggtaggtgctccaggagcc
catggtgaacctggcgacatctacctggctccagggctgaagggggacaaaggtctgcct
ggtttcgttggaacacgaggtctacctggtgtagatggactgccagggaaagaaggacta
gcaggcctgcctggatccaaaggagaaccggccagagagggcatcaagggggaccgtggt
ctcgatggggaccctggtttctctggacccccaggagagaggggtcctcctggggtacca
gggtttggccggccgggggagcctggagagaagggtacatctggtcaacaaggccgactt
ggaatccctggacaaccaggagtgaaaggtgaaccaggtaaagatgtgagctcacctgga
ccccagggctcccccggacctcgaggacaatctggcattcctggactacaaggtgacaga
ggacttcagggagaccctggaatgccaggattccccggacagaaaggtgactcaggtgtc
cccggcattggattcccaggactaaccgggcctaaaggatactctggagctccaggagcc
cctggaatgccaggagagcctgggagatctggacaggatggtttctctggaaaaccaggc
atacctggtccaaagggtgagccaggtcggggtctacctggtcctaaaggttctcagggc
cctcccggagagacaggttttcatggagataaaggcaatgttggtccaactggtattcct
ggacaagagggaaacacaggaccacctggagctcagggaattcaaggtgaccctggcccc
cctggtcagcatggtggcactggaccccctggaccccctggagcaggagaacctggggcc
cctggaccaataggaccccctggagagccaggtcccttcggtcctgaaggtgtgaaagga
gataagggcttccctggctctcctggtctggacatgcccggcccccagggagagaaggga
gactcaggattccctggactgtctggatcaaaagggttgccaggaagacctggcccggcc
ggcagagatggattccccggagacccaggcctcaagggagagatgggagtcatgggaacg
cctggaacaccaggatatcagggttctgctgggagccctggaactcctggacagagaggc
aacccgggtgtctctgggcctaggggggagtttggtgagcctggacccaaaggagagagg
ggagagcagggtctgcagggtcctcctggcaacatgagtgagctgaacatggggaacatg
aagggacagaaaggagacagcggagacccaggtgaccctggacacactggagtgaagggt
tatccaggacaggccggagtacctggtatgccaggaaaggatggagagcccggtacacct
ggtcaaccaggtgagaaaggagacacaggtgttcctggtgagcccggcagtactgggtat
cctggaaacaaaggaagcattggagaaatgggatacccaggttctgtgggtccgaagggt
gctaaaggcattgtgggcacaacgggtcacccagggttcctgggtacagagggggtgaaa
ggagacaagggaacagtcggtttgccaggtgtcggagtgccaggaccccctggagagaag
ggtcagttgggtctgactggtttccctggtaacgcaggagagaagggtcagaagggagga
atgggagtccccgggatgccaggaacaccaggaaccaagggagacactggttacattggt
cacccaggtcagccgggtcggccaggagagaagggtgtcggtgggctgcccgggtcaaca
ggagagccaggtcaaacaggtcgaccaggtgagcctggtctgcagggtcccccaggtccg
actggagagaaaggagagtcaggagtggacggcattcctggatcatcaggagacagagga
gaccaaggttttcctggcagaggcttcccaggaacgccggggtcgtctgggtttaaaggt
gataagggtagtccaggtttcccaggttccccaggtatcccgggtatcccagggaccagg
ggagagaagggtacggcaggcttccagggctccctgggccagccaggggaacagggccac
ccaggacccgctatggaggggcccaaaggagaccaaggagtgccaggaaagcctggagaa
ccaggtaccagtggtgttccaggtcctgctggtgttcccgggagcgcgggggggaaggga
gacaagggagatcagggtggacaaggaggacagggcgagcagggcttaaagggagaacga
ggatactctggacttcctgggcaatctggccttccaggtgttgatggactgaagggagag
atgggattgcagggtgtgcctggtttcccagggacaaagggtgaattgggtgtgtttgga
ttgaaaggagagctgggagacagaggattcccaggaactaaaggtaatgatggcccccct
ggtcctcctggcctccacaccttcatcaagggagaaagcggcttcccgggtagtcagggc
cctcaggggcctgtggggccctcaggtttccctgggctgaaaggacagcaaggtatgaca
ggtattcagggtattaaaggtgacgagggaaaccctgggattaacggtctccccggagcc
aagggagaaccaggcctgtttggtccctcaggaccgagagggtatcccggaccccctgga
cctgatggtgttccgggtcaggtaggtcctcccggcccctcctccatggagcatggtttc
ctggtaaccaggcacagccaatcggtggaggttccacagtgtccagagggaacatcgctg
atctatgatggatactccctactctacatccagggcaatgagcgttcccacggacaggac
ctgggtacggctggtagctgtctgaggaagttcagtcccatgcccttcctcttctgtaac
atcaacaacgtctgttactttgcctcccgtaacgactactcctattggcttacctcccct
gagcccatgccaatgaacatggaccctatcaccggccagggcatcaggcccttcatcagc
aggtgttctgtgtgtgaggctcctgccatggtgatagcagtacacagtcagaatatcatg
atcccatcatgccccaatggctgggactcactctggattggctactccttcgtcatgcat
accagtgcaggtgctgagggctctggccaggccctggcatctcctggctcctgtctagaa
gagttccggagcgctcccttcatcgagtgtcacgggcgtggaacctgcaactactacgcc
aactcctacagcttctggctggccgccatcgaggacaatgagatgtttacgaaacccata
cccaccacgctaaaggcaggaagtctccggactcacattagccgttgccaggtgtgcatg
aagaggacatag
DBGET
integrated database retrieval system
