Oncorhynchus nerka (sockeye salmon): 115118052
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Entry
115118052 CDS
T07952
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115118052 (chd1)
03036 Chromosome and associated proteins [BR:
one03036
]
115118052 (chd1)
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
115118052 (chd1)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
115118052 (chd1)
SLIK complex
115118052 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
115118052
NCBI-ProteinID:
XP_029502451
LinkDB
All DBs
Position
LG4:2515335..2557093
Genome browser
AA seq
1801 aa
AA seq
DB search
MAGRSEDEGVSNSSGESSNSDDESGSGSGSGSSSSSSSSSSSGSGSGSGSDSGSQSDSDS
GKSKEKNEPENKAKIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQSSSNSGSDSSSSD
DSDDDSSGKRRKSGSGSSSGSGSGSGSGSGSDSSAQEQEHSEESDDYEPSHKVKSRKLPT
KANARNGKKSNVQRKKPSAGSSSDDDYDGKKSSSNQGPRRQATQNVSYKEDEEQKTDSDD
LVEVCGEDVPPPDEDEFETLERVMETRIGRRGATGGTTTVYAVEADGDPNANFNPNKEAG
EQQYLFKWKGWSHIHNTWETEETLKLQNVKGMKKLDNFKKKESDKKKWIKCSSPEDVEYF
NCQQELMDDLHSQYQLVERIIGHSNQKSAAGFPDYLCKWQGLSYSECSWEDGALISRKYQ
KSIDDYMRRNQSKTIPSRDCKVLKQRPRFIPMKKQPSYIGGEGLQLRDYQLDSLNWMAHS
WCKGNSCILADEMGLGKTIQTISFLNYQFHEHQLYGPFLLVVPLSTLVSWQREIQLWAPL
MNVVVYLGDISSRGMIRTHEWMHVQNKRLKFNILLTTYEILLKDKGFLGNVPWAFIGVDE
AHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEIFEEEH
GKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNYK
ALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDSEFYNKQEALQHLIRSSGKLVLLDK
LLLRLRERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEGS
EDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVTK
SSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGTAPSSATPFNKEELSAILKFGAEE
LFKEQEGEEQEPQDMDIDDILKRAETRENDPGPSTVGEELLSQFKVANFSMMEEEEIVMD
SERHHRGWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQVNFNGSESRRSRNRRY
SGSDSDSVSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDA
ELVDKSEHDLKRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGPTFRISGVQVNAKLV
ISHEEELAPLHKAIPADPDERKRYTIPCHSKAAHFDIDWGKEDDSSLLIGIYEYGYGSWE
MIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQRQAGTANWRKR
KPRSKKTKAVKPAKVDEVVKSPSSTPHSDKSSEDEIEEEKEVVPVKLPPRRGRTERVVVK
EEPEPEEEPEPEEEKEKEPKEREMKKEVKKEKKEESREVKEKDLKEKKETKPVDPVHEQE
EVTGEKPSEVKTEVREKVKKTSDTPVHITAVGENISEESEELDQKTFSVCKERMRPVKAA
LKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTE
FDARKLHKLYKHAIKKRQENAQAADGITSTVNTHGFKHADMERLKDNSHHDDSSRDSYSS
ERHHSSSRYHEDRDSRDRHTSDPYSRMSGSGGDSRKRPYSAFSNGKDHRDHYRSDRQDSR
YYSDSKHRKVDEHRSGRDGRMDSKERSHSDHRSHSEHHSGSDYSSGHHKSSSRGDSYRYH
ADWQMDQRASASGPRSPRDQRSPRDQRSPYDGRSPLGHRSPFEYSSDHKSTPEQIWSSRK
T
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atggctggaagaagtgaagacgagggtgtgagcaacagcagtggagagtcaagcaactcg
gacgatgagtccgggtcgggctctggatcgggctccagctctagttccagttccagtagc
agctcaggaagcggctcaggaagcggctcagactccggcagccagtccgattccgactct
gggaaatccaaggagaagaacgaaccagaaaacaaagccaagatcgacggagccgagttc
tggaagtccaaccccagtatcctagcagttcaaaggtcagctatgctcaggaaacagcaa
ctccagcagcaacaacaacagagctcttcaaacagtggatcggattcgtcgagcagtgat
gattcagatgacgactcgagtggaaagagaagaaaatcgggttctggatcgtcctccggg
tctggatcgggttctggaagtggttccggttctgactcgtcagcacaggaacaggagcac
agtgaagagtcggatgattacgagcccagtcacaaagtcaaaagcaggaagcttccaacc
aaggccaacgccagaaacgggaagaagagcaatgtgcagaggaaaaagccctctgcgggc
tcatcctcggacgacgactacgacggcaagaagtcgtcgtcgaaccaggggcccaggcgc
caggccacgcagaacgtcagctacaaggaggacgaggagcagaagactgactctgacgac
ctggtggaggtgtgcggggaggatgtgcctccgccggacgaggatgagtttgagaccctg
gagcgtgtgatggagacgcggatagggaggagaggagcgactggaggcaccaccacagtg
tacgcagtggaggctgacggagaccccaacgccaacttcaaccccaacaaggaggcgggt
gagcagcagtacctgttcaagtggaaaggctggtcccatatccacaacacctgggagacg
gaggagacgctgaagctgcagaacgtcaagggcatgaagaaactagacaacttcaagaag
aaggaatcggacaagaagaaatggataaaatgttcttcaccagaggatgtggaatacttc
aactgtcaacaggaactcatggacgacttacactcacaatatcagctggtggagaggata
attgggcattcaaatcagaagtcggcggccggttttccggactacctgtgcaagtggcag
ggcctgtcgtactccgagtgcagctgggaggacggagccctcatctccagaaagtaccag
aagagcatagatgactatatgcgcagaaaccagtccaagaccattccctccagagactgc
aaggtgttgaaacagaggccaagatttattcccatgaagaaacagccgtcctatatcggt
ggagaaggactgcagctccgagactaccagttagacagcttgaactggatggctcactca
tggtgcaaggggaacagttgcatcctggcagatgagatgggcctgggaaaaaccatccag
accatctccttcctcaactaccagttccatgaacaccagctgtacggaccgttcctgctg
gtggtgcccctgtccacactcgtctcctggcagagagagatccaactgtgggccccgctc
atgaacgtggtggtctacctgggtgacattagcagccggggcatgatcagaacacatgaa
tggatgcacgttcagaacaagagactcaagtttaacatcctgctaacaacatatgaaatt
ctcctaaaagataagggattcctggggaacgtgccatgggccttcatcggcgtggatgag
gcccaccggctgaagaacgacgactcactcctttataagaccatgatggacttcaagtcc
aaccaccggctgctcatcaccggcacgccgctgcagaactcactcaaagagctctggtcc
ctgctgcacttcatcatgcccgaaaagttccactcgtgggagatatttgaggaggaacat
gggaagggtagggactctggctacaccagtctacacaaggagctggagcccttcctgctg
cgtagagtcaagaaggatgtggagaagtctcttcctgctaaagtggagcagatcctcaga
gtggagatgagcgccattcagaaacagtactacaagtggattttgacgaggaactacaag
gccctgagtaaaggtaccaaaggtagcacgtctggcttccttaacatcatgatggagctg
aagaagtgctgcaaccactgctatctcatcaagcccccagaggacagcgagttctacaac
aaacaggaggccttacagcacctaatccggagcagtgggaagctggtgctgctggacaag
ctgctgctgcgtctgcgggagcgtggccaccgtgtgctcatcttctcccagatggtccgg
atgctggacatcctggccgagtacctgaagagccgccagttcctcttccagagattggac
ggctccatcaagggagagatgaggaaacaggcgctggaccatttcaacgctgagggctct
gaggatttctgcttcttgttgtcaacgcgggcgggcggtctgggcatcaacctggcgtcg
gccgacacggtggtcatctttgactctgactggaacccacagaatgacctgcaggcccag
gccagagcccacaggattggccagaagagacaggtgaacatctaccgcctggtgactaag
agctcggtggaggaggagatcattgagcgagccaagaagaagatggtgctggaccatcta
gtcatccagaggatggacaccacgggcaagacagtcctccacaccggcaccgccccctcc
agtgccactccgttcaacaaggaggagctgtcggccattttgaagtttggtgccgaggag
ctgttcaaggagcaggagggggaggagcaggagcctcaggatatggacatcgacgatatc
ctgaagagagccgagaccagagagaatgaccccggcccctccactgttggagaggagctg
ctctcacagtttaaggtggccaacttctccatgatggaggaggaggagatcgtcatggat
tctgagcgtcaccatcggggctgggatgacatcatccccgaggagcagcggcggcggatg
gaggaggaggagaggcagaaagagctggaggagatctacctgctgccccgcatgaggaac
tgtgccaaacaggtcaactttaacggcagtgagagccggcgtagtagaaacagacggtat
tccggctccgacagcgactccgtctcggatcgcaagaggcccaagaaacgaggacggcct
cggaccattccacgagaaaacatcaagggcttcagcgatgctgagatacgaagatttatc
aagagctacaaaaagtttggtggaccacttgaaagactggatgctattgcccgtgatgcc
gaactagtggacaagtctgaacatgacctgaagcgtctggcggagacggttcacaacggc
tgtctgaagactctcagggagaacccctgtggaccagagaagacgtcaggaggcagaaga
gggaaagtgaaaggccctacgttcaggatctcaggcgtccaggtgaacgccaagctggtg
atctcccacgaggaggagctggcgccgctccacaaagccattcctgccgaccccgatgag
aggaagaggtacacaattccatgccactccaaggcagcacactttgacattgattggggc
aaggaggacgactctagcttgctcataggaatctacgagtatggttacggcagctgggaa
atgattaaaatggaccctgacctcaacctgacacacaagctcctaccagacgaccctgac
aagaagccacaggccaagcaactgcagacgagagcagactatcttatcaaattactgagc
aaggacctggccaaaaaggaagcacagaggcaagcagggacggccaattggcggaagagg
aaaccgaggagtaagaagaccaaagctgtgaagccagccaaggtggacgaagtggtgaag
agtccgtcctctacgccccactcagacaagtcctcagaggacgagattgaggaggaaaag
gaggtggtcccggtaaagctgccacccagaaggggccgaacggagcgcgtggtggtgaag
gaggagcctgagccagaggaggagcccgagccagaggaggagaaggagaaggagcccaaa
gaaagggagatgaagaaagaggttaaaaaggagaagaaagaagagagccgcgaggtgaaa
gagaaggacctgaaagagaagaaagaaaccaagcccgtggatccagtacatgaacaggaa
gaggtcacaggggagaagccgagcgaggtgaagactgaggtacgagagaaggtgaagaaa
acttctgacactccggtccacatcacagcagtgggagagaacatctcggaggagtcggag
gaactggaccagaagaccttcagtgtgtgtaaggagaggatgcgaccggtcaaggcggcc
ctgaagcagctggaccgtccggagaagggcctgtcggaacgcgagcagctggagcacacg
cgccagtgcctcatcaagatcggagaccacatcaccgagtgtctgaaggagtactccaac
cccgagcagatcaaacagtggagaaaaaacctgtggatatttgtttcaaaatttacagaa
tttgatgcaagaaaattgcataaactgtataagcacgcaatcaagaaaagacaagagaac
gctcaggcagcagatgggatcactagcactgtaaatacccatggctttaaacatgcagac
atggagaggctgaaggacaactctcaccacgacgacagcagcagggacagctacagctct
gaaaggcatcactcgtcgtcgcgctaccatgaggaccgcgacagccgggacaggcacacc
tccgacccctacagcaggatgtcggggagcgggggggactccaggaagagaccctactcg
gccttcagcaacggcaaagaccacagagaccactacaggtcagaccggcaggacagcaga
tactacagcgacagtaagcacaggaaggtagacgagcaccggtcaggccgagacggacgg
atggacagcaaggagcgctcccactcagaccaccgctcccattccgaacaccactcgggc
tccgactactcatcgggccaccacaagtcgtcatcgcgaggtgactcctaccgctaccac
gcagactggcagatggaccaacgggcatcggccagcggtccccgttcgccgcgtgaccaa
cgctcgccacgcgaccagcgctcgccctacgacggacgctcgccgttaggccaccggtcg
cccttcgagtactcgtcagaccacaagagcacgccagagcaaatctggagcagccgcaag
acataa
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integrated database retrieval system
