Oncorhynchus nerka (sockeye salmon): 115118101
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Entry
115118101 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: coatomer subunit beta'-like
KO
K17302
coatomer subunit beta'
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115118101
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115118101
Membrane trafficking [BR:
one04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
115118101
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
115118101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_SPT8
PEP5_VPS11_N
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_LRRK2
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
115118101
NCBI-ProteinID:
XP_029502504
LinkDB
All DBs
Position
Unknown
AA seq
828 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMVASLYNGSVCVWNHETQTLVKTFEVCDLPV
RVAKFVARKHWVIAGADDMQIRVFNYNTLERAHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWDRKWVCGQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHTQNVSCVSFHPE
LPIILTGSEDGTVRVWHSSTYRLENTLNYGMERVWCVCGQRGANSVALGYDEGSIIIKLG
REEPAMSMDSNGKIMWAKHSEVQQANLKAMGEAEIQDGERLSLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWGHDSSEYATRESTSMVKIFKNFKE
NKSFKPDFGAEGIHGGFLLGVRSVSGLAFYDWENTELVRRIEIQPKHVFWSESGELVCIA
AEESFFVLRYLAEKVATAQETKEGVTEDGIEDAFEVLGEIQEVVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTVAHLDRTMYLLGYIPKDDRLYLGDKELNIVTYSLLVSVLEYQTAVMR
RDFGMADRVLPTIPKEMRTRVAHFLEKQGFMQQALAVSTDSEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELATTKCQFVLAQECLHHAQDYGGLLLLATASGNTTMVGKLAEGAE
RDGKTNVAFLTYFLQGKLDKCLELLIKTNRLPEAAFLARTYLPSHVSRVVKLWKESLGKV
NQKAADALANPTDYSNLFPGLQEAFLAEDYLKETHVRLRPAAEYPLIT
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgcctctccggttggacatcaagcggaagctgaccgctcggtcggaccgtgtgaagagt
gtggacctgcacccaactgaaccatggatggttgccagcctgtacaatggcagtgtctgt
gtctggaaccacgagacacagaccctggtgaagacattcgaggtgtgtgacctgcctgtg
agagtggctaagtttgtggcgaggaagcactgggtcattgcaggagcagatgacatgcag
atccgtgtgtttaactacaacactctggagagagctcacatgtttgaggcccactctgac
tacatccgctgcatcgcagtccacccaacacaaccttacatccttaccagcagtgatgac
atgctgatcaagctttgggactgggacaggaagtgggtgtgtggtcaggtgtttgagggc
cacacccactatgtcatgcagatcgtcatcaaccctaaagacaacaaccagttcgccagc
gcctccctggacaggaccattaaggtgtggcagctgggatcttcctcccctaacttcact
ctggagggccatgagaaaggagtcaactgtatcgactactacagcggaggggacaagccc
tatcttatatcaggagctgacgaccgcctggtcaagatctgggactaccagaataagaca
tgtgtgcagactctagagggccatacccagaatgtgtcctgtgtcagctttcaccctgag
ctgccaatcattctcacaggctccgaggacggcacagtgagagtctggcattccagcacg
taccgcctggaaaacacactgaactatgggatggaacgtgtgtggtgtgtgtgtggccaa
cgaggcgccaacagtgtggcgctgggatatgatgaaggcagcatcatcatcaagttgggt
cgcgaggaaccagccatgtctatggactctaacggtaagatcatgtgggccaagcactct
gaggtgcagcaggccaacctgaaggccatgggagaggctgagatacaggatggagagagg
ctgtccctggccgtcaaagacatgggcagctgtgaaatctatccccagaccatccagcac
aaccccaacggcaggtttgtggtggtgtgtggggatggagagtacatcatctacactgca
atggccctgaggaacaagagcttcggttcagcacaggagtttgtctggggccacgactcc
tcagagtatgctactcgggagagcaccagcatggtcaaaatcttcaagaacttcaaggaa
aataagtcttttaaaccagactttggggcagaaggtatccatggtgggttcttgctgggc
gtgaggtcagtgagtggtctggccttctacgattgggagaacacagagctggtccgccgc
attgagatccagcctaaacacgtcttctggtcagagtctggggagctggtgtgtattgcc
gcggaggagtctttctttgtgctgcgctacctggctgagaaagtggcaacagcacaggag
accaaggagggagtcaccgaggatgggatagaggatgctttcgaggtgttgggtgagatt
caggaggtggtgaagactggtctgtgggtgggagactgtttcatctacaccagctcagtc
aacagactcaattactacgtaggaggagaaattgtcaccgtcgcccacctggacagaact
atgtacctgttgggctacatccctaaggatgaccgtctgtatctgggtgataaggagctg
aacatcgtcacttactctctgctggtgtcggtactggagtaccagacagctgtaatgagg
agggactttgggatggccgacagggtcctacccaccatccctaaagagatgaggaccagg
gtcgcccactttttagagaaacagggtttcatgcagcaggctctggctgtgtccacagac
tcagaacacaggtttgagttggctctgcagctaggagaactgaagatcgcctaccagctg
gctgtagaggctgagtcggagcagaagtggaagcagttggcagagctggccaccactaag
tgccagtttgtcctggcccaggagtgtctgcaccatgcccaggactatggggggctactg
ctgttggccacagcctcgggcaacaccaccatggtgggcaagttggcagagggggcagag
agagacggcaagaccaacgtggctttcctcacctatttcctccaggggaaactggacaaa
tgtctggagctcctcattaaaaccaaccggctgccagaggctgcattcctggccagaaca
tacctgcccagccatgtgtctagagtggtgaagctgtggaaggagagcctggggaaggtg
aaccagaaggcggctgatgcgttggccaaccctacagactacagcaacctgttccccggc
ctacaggaggccttcctggccgaagactacctcaaggagacccacgtcaggctgaggccc
gccgcagagtaccctctcatcacc
DBGET
integrated database retrieval system
