KEGG   Oncorhynchus nerka (sockeye salmon): 115119168
Entry
115119168         CDS       T07952                                 
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03082  ATP-dependent chromatin remodeling
one03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    115119168
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    115119168
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:one01009]
    115119168
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:one03021]
    115119168
   03036 Chromosome and associated proteins [BR:one03036]
    115119168
Protein phosphatases and associated proteins [BR:one01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     115119168
Transcription machinery [BR:one03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     115119168
    SWI/SNF complex
     115119168
Chromosome and associated proteins [BR:one03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    115119168
   PBAF complex
    115119168
   SWI/SNF complex
    115119168
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 115119168
NCBI-ProteinID: XP_029503786
LinkDB
Position
LG4:complement(6176944..6195576)
AA seq 370 aa
MALSKTFGQKPIKFQLEQDGDFYMVGSEVGNYLRMFRGSLYKRYPSLSRRLASVEERKKI
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKGKRNSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSERENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFRSDFSENPLPTVEIAIRNTGDADTWCPLLETLTDAEMEKKIRDQDRNTRRM
RRLANTAPAW
NT seq 1113 nt   +upstreamnt  +downstreamnt
atggcgttaagcaaaacctttgggcagaaaccgataaaatttcagttagagcaagatgga
gacttttacatggttggatcagaggttggaaactacctgcgtatgttcaggggctccctg
tataaaaggtacccatcactctcgaggaggttagcctcagtagaggagaggaagaaaatt
gtagcatcatcgcacgccacaagtgtgactctgctgaaggcctccgaatgtgaagagatt
ttcgaggggaacgatgagaagtacaaagctgtttccatcagcacagaaccaccggcctac
ctcagggagcagaaggggaagaggaacagccagtgggtccccacactgcccaacagctcc
caccacctggacgctgttccctgctccaccaccatcaaccgcaaccgcatgggccgcgac
aagaagaggaccttccccctgtgctttgacgaccacgacccggcggtgatccacgagaac
gcgtctcaggccgaggtgctggttcccatccgtctggacatggagattgatgggcagaag
ctcagagatgcgttcacctggaacatgaacgagaagctgatgaccccggagatgtttgca
gagatcctgtgtgacgacctggacctgaacccactggccttcgtcccggccattgcctca
gccatccgccagcagatagagtcctaccccacagacagcatcctggacgagcagaccgac
cagagggtcatcatcaagctgaatatccacgttgggaacatctccttggtggaccagttt
gagtgggacatgtcggagagggagaactctccggagacgtttgccctcaagctgtgctcc
gagctgggcctgggaggagagtttgtcaccaccatcgcctacagcatccgtggccagctc
agctggcaccagaggacgtacgccttcaggtctgatttcagtgagaatcccttgcctaca
gtggaaatcgccatccgcaacacaggcgacgctgacacatggtgccccctgctggagacc
ctgacagatgcagagatggagaagaagatcagggaccaggacaggaacactagacgaatg
agacgacttgccaacactgcccctgcctggtag

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