Oncorhynchus nerka (sockeye salmon): 115119216
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Entry
115119216 CDS
T07952
Symbol
dhx36
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115119216 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115119216 (dhx36)
03012 Translation factors [BR:
one03012
]
115119216 (dhx36)
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115119216 (dhx36)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115119216 (dhx36)
Translation factors [BR:
one03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115119216 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
NB-ARC
ATPase
NPHP3_N
AAA_16
DUF7428
Motif
Other DBs
NCBI-GeneID:
115119216
NCBI-ProteinID:
XP_029503833
LinkDB
All DBs
Position
Unknown
AA seq
1078 aa
AA seq
DB search
MSYGGYGGRGGRRGGRRGGRGFGRDGSRERWDRLAGSSGGGHPRSTETESREDRGERGGR
GGGPNRPPPHLKGREIGLWYAKWGGLKRKENERKSRAVVQMDESREQHITNLLNTVQRGP
TCPAREAHPSTSEHWRSTPSAPDRGSHCYFDGDEPSQDVLKIDLKQEKKEDEERPVQNTP
LTSQRYFPQDVLKAEPQEEREEKERRGKDKDLEYLFQEVVRENALDQQLKRDLERKKADS
KYLDMLKFREKLPSFGKKEELVELIRSSQVLVVSGETGCGKTTQVTQFILDDYIERGMGS
VCRVVCTQPRRISAISVAERVAAERAESVGDGNSCGYQIRLQSRLPRKQGSVLYCTTGII
LQWLRSSPLLSTISHLVLDEIHERNLHSDVLLIIVKDLLRVRQDLKVILMSATLNAEKFS
KYFNNCPMIHIPGMTFPVQEFLLEDVLEMIRYRPQKKEQRPRWKRGFMQGQNSRPEKDQK
EAEYKESWPCYARTLRDKYSDRTIDVLEMLDDDDKIDLELIVQLIRHIVLSQEEGAILVF
LPGWDNISGLNDLLMAQQMFKSDRFVIIPLHSLMPTVTQTSVFKRPPPGVRKIVIATNIA
ETSITIDDVVFVIDGGKIKETHFDTQNNISTMTAEWVSLANAKQRRGRAGRVCPGKCLIT
VRDGLRAXLLDALPAPEIMRTPLEELCLQIKILKLGQIAEFLRKALDPPTDEAVTLAITH
LMDLNALDRSEALTPLGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFFI
PMGKEKMADFRRRTLSRDSKSDHLTIIYAFTGWEEAKRRGYKFEREFCWDNFLSANTLQM
LHNMKGQFAEHLLGAGFTSSKNPKDPESNTNSDNEKLIKAVIVAGLYPKVAMIKPSGSKK
RPVRVYTKTDGKVCIHPKSVNAEETQFNYTWLIYHLKMRTSSIFLYDCTEVSPFSLLFFG
GDVTIQMDQDQETIAVDDWIVFQSPARIAHLVKNLKKELDSLLEEKIRSPAPVDWSNRQS
KDCAVITAIIDLITTQERPNVNARNTEPRGRRQYHNNDDGDEYENCCISSQPREKLRP
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggaggttatgggggcagaggcggccgacgaggtggccgaagaggaggtcga
ggattcggacgggatgggagccgggagaggtgggaccgcctagctgggtcgagtggtggt
ggacatccgcggagcaccgaaacggagtcgagggaggaccggggagaacgaggcgggaga
ggtgggggaccaaaccgtccacccccgcatctaaagggccgggagatcggactgtggtac
gccaaatggggaggcttgaagaggaaagaaaatgagagaaaatcgcgggcagtggttcag
atggatgagtccagggaacagcatatcactaatctgctgaacactgtccagagagggccg
acatgcccagccagggaggcccacccctccacatctgagcactggcgttcaaccccgtca
gcaccggacagaggcagccactgttactttgatggtgatgagccctctcaggatgtcctg
aaaattgatctcaaacaagagaagaaggaggatgaggagaggccagtacaaaacactcca
ctcacatcacaacgttacttcccacaggatgtccttaaagctgaaccccaagaagagagg
gaggagaaggagaggagagggaaggataaagacctggagtacttgtttcaggaggtggtc
agggagaatgccctggaccagcagttaaagagagatctagagaggaagaaggcggactct
aaatacctagacatgctgaaattcagggaaaagcttccatcctttggaaaaaaagaggag
ttggtggagttgatcaggtccagccaggtgctggtggtcagtggagagactgggtgtggt
aagaccacccaggtgacccagtttatcctggatgactacatagagaggggcatgggttca
gtctgcagggtggtctgcacccagccacgtcgcatcagtgccatatctgtagcggagcgg
gtggctgcggagagggctgagagtgtaggggacgggaactcatgtggttatcagatccgc
ctgcagagtcggttaccacggaaacagggctcggtgctgtattgtacaacgggtattatt
ctacagtggcttcgctcttcccctctgttgtccaccatcagccacctggttttggatgaa
attcacgagaggaaccttcactctgatgttctgctcatcattgttaaagacctgctccga
gtccgacaggacctcaaggtcatcctcatgagtgccacgctcaacgctgagaagttctcc
aaatactttaataactgtcctatgatccacatccccgggatgaccttcccagtgcaagag
ttcctactggaggatgtgttggagatgattaggtaccgtccccagaagaaggagcagagg
cccaggtggaagagaggtttcatgcagggtcagaactccagaccagagaaggaccagaaa
gaggccgagtacaaggagagctggccctgctacgcccgcacactacgagacaagtactct
gacagaaccatagatgtgttggagatgttggacgatgatgataagattgaccttgagctc
atcgtgcagctgatcagacatatcgtgctaagccaggaagaaggagccatcttggtgttc
ctgccaggttgggacaacatcagtggccttaatgacctcctcatggctcagcagatgttc
aaatcagatcggtttgtgatcattcctctgcactccctgatgcctactgtcacccagacc
tcggtgttcaaaaggccccctccaggagtcaggaagattgtcattgccaccaatatcgct
gagaccagtattaccatagatgatgtggtgtttgtgatagatgggggaaagattaaggag
actcactttgacactcagaacaacatcagcactatgactgcagagtgggtcagcctggcc
aatgccaaacagagaagaggacgcgctggcagggtgtgtccagggaagtgtttaatcacc
gtaagagatggcctgagggccngtcttctggatgccctaccagctcctgagatcatgcgc
acaccactggaggaactgtgtctgcagatcaagatcctcaagctgggtcaaatagcagag
ttcctgaggaaagctctggaccctcccacagacgaggctgtcactctggccatcacacac
ctgatggacctcaatgctctggaccgctcagaggctctgaccccgttagggttccacctg
gccaggctgcctgtagagcctcacatcgggaagctgatcctgtttggagctctgctgggc
tgtctggaccctgtcctcactatcgctgcctctctcagcttcaaggaccccttcttcata
ccaatgggtaaggagaagatggcagactttaggagaagaactctgtccagagactcaaag
agtgaccacctcaccatcatctatgccttcacaggctgggaggaagctaagcgacgcggc
tacaagtttgaacgagagttctgctgggacaacttcctgtcagccaatacactccagatg
ctgcacaacatgaagggtcagtttgccgagcacctgctgggggctggcttcaccagcagt
aagaacccaaaagaccctgaatctaacactaactcagataatgagaagctgatcaaggca
gtgatagtggcaggtctctaccccaaagtggccatgatcaaacccagcggcagcaagaag
agaccggtgagggtgtataccaaaaccgatgggaaggtgtgtattcaccccaagtcagtg
aatgctgaggagacccagtttaactacacatggctcatctatcacctcaagatgaggacc
agcagtatcttcctgtacgactgtacggaggtgtctccgttctccctgctgttctttgga
ggtgacgtcaccatacagatggatcaggaccaggagaccatcgctgtggacgactggatc
gtcttccagtcccccgcacgcatcgctcacctcgtcaagaatctgaagaaggagctggac
tctctattggaagagaagatccgaagccccgcccctgtggactggagcaaccgccaatcc
aaagactgtgccgtcatcacagccatcatagacctcatcaccacccaggagaggcccaac
gttaacgcgaggaacactgagcctagaggacgccgccagtatcacaacaacgatgatggt
gacgagtacgagaactgctgcatctcttctcaacctagagaaaagctcaggccatag
DBGET
integrated database retrieval system
