Oncorhynchus nerka (sockeye salmon): 115119563 Help Entry 115119563         CDS       T07952                                  Symbol setx Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism one  Oncorhynchus nerka (sockeye salmon) Brite KEGG Orthology (KO) [BR:one00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:one03021]     115119563 (setx) Enzymes [BR:one01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      115119563 (setx)     5.6.2.5  RNA 5'-3' helicase      115119563 (setx) Transcription machinery [BR:one03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      115119563 (setx) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 SEN1_N AAA_19 AAA_30 Viral_helicase1 UvrD-helicase AAA_22 ResIII UvrD_C_2 AAA_16 Rad17 AAA_7 Motif Other DBs NCBI-GeneID:  115119563 NCBI-ProteinID:  XP_029504264 LinkDB All DBs Position LG4:complement(6761380..6827248) Genome browser AA seq 2455 aa AA seqDB search MMSMCRWCTSLGDDVAKLLQRYCAVSWLAEDEEAVNEKAALNDDLDKCLECVVAYHRAKE ELPGLHRRLWELETSRLLDLFSHAAKDAQPAKDLSYVEEDGREIGVSNISPAVYEDRLGV PLSEVLKYPYLLASPELSEMCVEAICKMEEYNSFRVCSKDPGIYLLLVHPNETVRRWAIG AARSLGKVDRDDFYDLQDIFTCMFYIVELRIPQNFPDMDTSYDPTTKMTLLQPHLYDSKN AKNYWLGICMLLTQLDAQAMDSLFLGPDKQANILLCILNALKDEEPSNEMDPFWPVLQCF MVILDCLGSRFWGQIEPSQAFQAITQSPSYSGELDSIRQQTMISRVKTETTYDDDDMVTC SQMVYDSNAKVSKGSRRSRGVDSNVVYEDMSSLVNLLHSDVGQALRVHDSTFLWFIPFVK SVMDLDEHSVLYITEVVHYLCGEISTDLPKPQVRICDKVTEFFTLILVHIIELHLGSGRM NMLYYCAPKWVGVLVKCATLPGDAFVHTSEGPVSHSVSSTSSLRVSVPRKASTSRAVPQA CMHIIRSLLKEGTRLNPNSKCHHFLNLLNKHLRDGQQREWKLIRPEIQELQICLKDYVKM MMNRPTISTSPPEPLDIEAGPVAPTTPPLQSSNDPSGPSSLAEFNPPIKREGLWDDVEGS TSGGGDFSGVQRGWDINIALVKKEPLTPEEEFVEPTNDSRPTQDNLTSLRADPEKIQVIK SRLGQLMTKKSKSERARPSVGLSEFGKEKPENLLTSRREEASNLQGISRHPPCLQESMDN VPLSVLKSYLKGKEGSKSSRDLSKGNSRQFDRPQSPPKSTSDVIVISDDEATLDVGRARR PECLSETSQIKNEPDASDQNPSPWRDYDGDMSESQVFEFETQEDMVSAWSNRDSESNMPP EKPKDDSPVSPSSREPLSSWECDTQPIYDEDIERACQQVEKELEKPKTPPQGLKRAIVVK KRNLLVDAKPLASKCLSKKPTVVEKRIKEPVKDAPHAVTPPLRKSSSTVRSNRLETETHS SLTTSAISHKTSLTPAIVPPKKVRKATEPVSTAEKLGLKKKVRKAFDLSQGSRDSVGDLR HHGATVNVPQAKKPTRQTKRSKVTFPQKGVVKGSNTKLFQFFRQSKQALGAGISEKAEPM KRNLKKIDEIQTPSFATEEDDEDEDLQCSQQDPACHEEQLTFNRSSQRANEDKPASSNTV SSVLSNMDRQISPYFQRNDVTPGPSGQVPKSNEGEDYDADWMHLTQMEPTEMEMCTQLEE EEDFFYTQRDPVDMDIDADSQRPFEDKGGSSDLTWFKQADEGQEAPLATQTFKKPATPPP SRSNLTQDDERLFLKPGMSPMSVKKAKPSTTKIYATSSSRSASLVQEMERTANAPFSASS APAGRGRPARPVVPARPVVPGLPVVHAQSPCVRQLPSHQEVGQSLPLNRLLYKPIAPQPP PKPIPPKQPPPRPEQNLPHPPCLPLRPVQHSNTCSTPQPSTSRHDAPFRSQIPNPEVGFR FDTTFLVQHILKWTFDMFSNYKQFGIPSEVCELPLKEVGSSFSSYDEYYKTFYPLLLTNT FEELAGEWLKNKESGKVVTQNLKVVAHEYSHSVWNVSFTASITASDDSRQMFPREEDLVI LWLPQNRGAYSWHEQDLLDPQEQFGYVQRSNVCNGGVGQCPTLNLMIKTLGNVRLANKQA VRCDVVGSLVSTMREFRAICLLNGSSMCKPLLAPHVSYFQPGPEVIPSLNLPDYNLDQVR AVRTGLSVIRNQQLNPKICLIHGPPGTGKSKTIVGILQKLFSEGVQSMTPPVNRHSEPRR MRVLLCAPSNAAIDNLMKKIIPLFKEKCRNIQGNCGDINLVRLGNERTISKNLKPFSLDS QVKNKTQRAQMSQDSDIHRRRAQLDENIDKISKILPKLQKKEEMYHELAAQKSRMLQERE TLSLQLKKSRIRKQETQAQVLQDAHVVCCTLSTSGSTILESAFRRLGHKPFSCVIVDEAG QATETETLIPLLYHCNALILVGDPHQLPPTVISQKAKELKYGQSLMARLVKNLDRYCKEN KKPSPVVFLSCQYRMHPEICEFPSKHIYCKALKTDSETAERRGNFGWPLLPYRVFDVTDG QEVKEGASFSNLKEVQLVVCLLRLMAEKQQVKVGVITPYNAQKDRINREMAKVVNKNLTV DVDTVEGFQGREMDCVIVSCVRASHEQGGIGFLGNRQRLNVTITRAKFSLFILGHLRTLQ ENQDWGALIKDAATRDVIISTNEMTFKTDARKIFKKELTRSSSYPLREPGPPSAAPCPIA DPPRPAPFQLRRSSEPALFAQGRDSPQQPWSASPPQDADRPRDPRLVVQTPQHRPDWNPR AERIRLPQAEIRRDPRAERDPRGCNSPEQRHPTEYQNQRWAVRERDREQHRSPITAPYPG DGVNRPPRDPSQRDYNRYSATAFNHHTHTHPRKRDPDPRWIPPTHSKRGRERTDH NT seq 7368 nt NT seq  +upstreamnt  +downstreamnt atgatgagcatgtgccgttggtgcacgtcattgggtgacgatgttgcaaaactgctccag aggtactgtgctgtgtcatggttagcagaggatgaggaggcagtcaacgagaaggcggca ctcaacgatgacctcgataagtgcctggagtgtgtggtagcgtaccatcgggcgaaggag gagttacctggactgcaccggaggctatgggagttggagacgtccaggctcctggacttg ttttcacatgcagcaaaagacgcacagccggcaaaggacctcagctatgtagaagaggac ggtcgggaaatcggagtgtcaaacatcagccccgcagtgtacgaggaccgtcttggggtt cccctgtcagaggtcctcaaatacccctacctgctggcatcccctgaattgagtgaaatg tgtgttgaggcaatttgtaagatggaggaatataactccttccgggtgtgttctaaagat ccagggatctacctcctcctcgtccaccccaacgagacggttaggcggtgggcaattggt gctgcaaggtctttaggtaaggtggaccgagacgacttttatgaccttcaggacatcttc acctgcatgttctacattgtcgagctgagaatcccccagaacttcccagacatggatacg tcctatgatccgacgactaagatgacattgctgcaaccgcatctttacgattccaaaaat gcaaaaaactactggttgggtatctgtatgcttctgacacagctggatgcccaggctatg gactccctgttcctggggccagacaaacaggccaacatactgctctgtatccttaatgcc ttgaaggatgaagaaccatccaacgagatggatcccttctggccagtcttgcaatgtttt atggtgatcttggattgtttgggctccaggttttggggtcagattgagccatcccaagcc ttccaggccatcacacaaagccctagctactctggagagctcgatagcatccgacaacaa accatgatatcacgggttaaaacagaaactacatatgatgatgatgacatggtgacctgc agtcagatggtatatgacagtaacgccaaagtgagcaagggaagcagacgctcacgtggt gtggatagcaatgtggtctatgaggatatgagttctctggtcaacctcctgcattcagac gttggacaggcattgcgtgtgcacgacagcacatttctctggttcattccctttgtaaaa tctgttatggaccttgacgaacacagcgtcctatacattactgaggttgtccactaccta tgtggggagatcagcacagacctcccgaagccccaggttcgcatatgtgacaaggtcaca gagttcttcactcttattctggtccatatcatcgaattgcacctggggagtggccgcatg aatatgctctattactgcgctcccaagtgggtgggcgtgttagtgaaatgtgccaccctg ccaggtgacgctttcgtccatacctcggaaggtccagtttctcactctgtgtcttccaca tcctccttgagggtcagtgtgccacgaaaggcctctactagcagggctgttccacaggca tgcatgcatatcatccggtccctgctgaaggaagggaccaggttgaaccccaacagcaag tgccaccacttcctgaaccttctgaacaagcacctcagagacgggcaacagagggagtgg aagctgattaggccagagattcaggagcttcagatctgtttgaaggactatgtcaagatg atgatgaacaggccaaccataagtacttctccacctgaaccgctggacattgaggcaggg cctgtggcaccaaccacacctccacttcagtcaagcaatgacccctcgggacctagcagc ttagctgaatttaaccctcctataaaacgggaagggttgtgggatgatgtcgaaggcagt acatctggtggtggggatttttctggagttcagagggggtgggacataaacatagcgttg gtgaaaaaggagcccctaacgcctgaagaggagtttgtagagccgactaatgattctaga ccaacccaagacaacttaacttccttgagggcagatccagagaaaatacaggtgatcaaa tccagactcggccagcttatgaccaagaagtccaagtctgagagagcgaggccctctgta gggctcagtgaattcggtaaagagaaacctgaaaatctgctcaccagccgtagagaggag gcatccaaccttcaaggcattagcagacaccctccatgcctccaagaatccatggacaat gtgcctctctctgttttaaaaagttatcttaaagggaaagaaggctccaaatcctcacga gatctgagtaaaggaaactcgagacaatttgaccgaccgcaatccccaccaaagtcaact tcagatgtaattgttatatctgatgatgaggctacattagatgttggtagagcaagaagg cctgagtgtttgtctgagacctcccaaataaaaaatgaaccagatgcctctgaccagaat cctagtccctggcgtgattacgatggagacatgagtgaatctcaggtgtttgaatttgaa acacaggaagatatggtgtctgcctggtccaacagagattcggaaagtaacatgccaccc gaaaagcccaaagacgatagccctgtcagtccatcttcaagagagcctttatcaagctgg gaatgtgatacacaaccgatctatgacgaggatatcgaaagagcctgtcagcaggttgag aaggagcttgagaagcctaagaccccacctcaagggctcaaacgggccattgttgtcaaa aaaagaaatcttcttgttgatgcaaaaccattggcctccaaatgcctgagcaagaaacct acggtggtagaaaaacgaatcaaagagcctgtgaaggatgctccccatgcagtcacaccg ccattgagaaaaagcagttcaacggtacgttcaaacagactggaaactgagacacactct tccttaaccacatcagctatctcacacaaaacgtcattaactccagccattgtccctcct aaaaaagtcagaaaagccacagagcctgtttccacagctgagaagcttggccttaagaag aaggtgcgaaaggcctttgatctttcccagggatcacgtgattctgttggtgatctgagg caccacggcgctacagtcaatgtcccacaggccaagaagccgacccgacagaccaagagg tcgaaggtgaccttccctcagaagggagtggtcaaagggagtaacactaagctgttccag ttcttcaggcagagcaagcaggcattgggagcaggaatttctgaaaaggcagagccaatg aagagaaatctgaaaaagattgatgaaattcaaactcccagttttgctacagaggaggac gatgaagacgaggacctgcagtgttcccagcaagatcctgcctgtcatgaggaacagctg acgttcaatcgcagctctcaaagagccaatgaggacaaaccagcatcctctaatacagtg agtagtgtgttgtctaacatggacaggcagatctctccatactttcaaaggaatgatgtc acacctggaccttctggtcaagtccccaaaagcaatgaaggtgaagattatgatgcagac tggatgcacctcacccaaatggagccaactgaaatggagatgtgcacgcagttggaggag gaagaagatttcttctacacacagcgggaccctgtagacatggacattgacgcagacagc cagaggccctttgaggataaaggagggtcttcagacttgacatggtttaaacaggcagac gaagggcaagaggctccacttgccacacagacttttaagaaaccggctactccgccaccc tcacgctctaacttgactcaggatgatgagcgcttgttcctgaaaccaggaatgtctcct atgtcagttaaaaaggccaagccgtccaccaccaagatctacgcaacctctagctccagg agtgcctccttggtgcaagagatggagaggactgccaatgctccattttcggcttcttct gcacctgctggaagaggtaggcctgcccggccagttgtgcctgcccggccagttgtgcca ggcctgccagttgtgcatgcacaaagtccctgtgtacgacaacttccttctcatcaagag gttggtcagtctcttccactgaatcgactcttatacaaacccatcgcgccacaaccacca cctaaacccattccaccaaaacaaccaccacccagacctgaacaaaacctcccccatcca ccttgcctgcccctccgccctgtccagcacagcaacacatgttccaccccccagccctcc acctccaggcatgacgcccctttccgaagtcagatccccaacccagaagttggcttcaga tttgacactaccttcctagttcaacacatcctgaaatggacctttgatatgttcagtaac tacaagcagtttggtataccctctgaggtatgtgagttaccactgaaggaagtaggatcc agcttcagctcttatgatgaatactacaagaccttttaccccctgcttctcaccaacact tttgaggagcttgcaggtgaatggctaaagaacaaggaatcaggaaaggtggtaactcag aatttaaaagttgtcgcacatgagtacagccacagtgtttggaatgtcagctttacagcg agcattactgccagtgatgactcccgtcagatgttcccacgggaggaggacctggtcatt ctgtggctgccccagaatagaggtgcttactcttggcatgagcaggacctcttggatccc caagaacaatttggatatgtgcagagatccaatgtctgcaacggaggcgtgggccagtgc ccaactctgaacctgatgataaagaccctggggaatgtgaggttggcgaacaagcaggca gtgcgctgtgatgtggtgggctccctggtcagcaccatgagggagttcagggcaatctgt ctgctcaatggcagctctatgtgcaagcccctcctggccccacatgtctcctacttccaa cctggcccggaggtcatccccagcctcaacctgcctgattacaacctagaccaggtgagg gcggtgagaaccggtttgtccgtcatcaggaaccagcaactcaacccaaaaatctgcctg atacacggacccccaggaacgggaaagagcaaaaccatcgtgggtatactgcaaaagctg ttctctgagggagtacagagcatgactcctccagtaaacaggcattctgaaccccgccgc atgagggtcctcctgtgtgccccgtccaacgccgccatcgacaacctgatgaagaagatt atcccgctcttcaaggagaagtgcaggaacatccagggtaactgtggggacatcaatctg gtgaggcttgggaacgaaaggacaatctccaagaatttaaaaccttttagcctggacagt caggtgaaaaacaaaacacaaagggcccagatgtcacaggactcagacatccaccggcgc agagcgcagctggacgagaacatagacaagatctccaagatattgccaaaactgcaaaag aaagaggaaatgtaccatgagctggcagcacagaagtccagaatgctccaagagagagag acactcagcctccaactcaaaaagtctcgcattaggaagcaggaaacccaggcccaggta ctgcaagatgcccatgtggtctgctgcaccttgagcaccagcggcagcaccatcctggag tcggcgttccggcgcctgggacacaaaccctttagctgcgtcatcgtggacgaggcaggg caggccaccgagacggagactctcatccctttgctctaccattgcaacgccctcatcctg gtgggagacccccatcaactgccccctacggttatctcccagaaagcgaaggagttgaag tacggccagtccctgatggctcggctggtgaagaacctggatcgctactgtaaggagaac aagaagcccagccctgtagtcttccttagctgccagtaccgcatgcaccccgaaatctgc gagttcccctccaagcacatctactgcaaggcccttaaaactgacagtgagactgcagag aggagggggaactttggatggcctctcctgccctaccgtgtgtttgacgtgaccgacggt caggaggtcaaggagggagcgtcgttcagcaacctgaaagaggtgcagctggtagtgtgc ctgctgaggctgatggctgagaagcagcaggtcaaggtgggggtcatcacgccgtacaat gcccagaaggaccgcatcaaccgcgagatggccaaggtggtcaacaagaacctcacggtg gacgttgacactgtggaaggcttccagggccgagagatggactgtgtcattgtctcctgc gtcagggcgagccacgagcagggcggcattggattcctggggaatcgccagaggttgaat gtgaccatcacccgggccaagtttagcctgttcattctgggccatctacggacactccag gaaaaccaagactggggtgcgctcatcaaggatgctgcgacacgagacgtcattatatca acgaatgagatgaccttcaagacggatgccaggaagatcttcaaaaaggagctgaccagg agctcgtcttaccccctcagagaaccaggccctccctctgctgccccctgtcccatcgcc gatccccccaggcctgctcccttccagctacgccgctcttctgagccagccctgttcgcc cagggcagggactccccccagcagccctggtcggcatcccctccccaggacgctgacagg cccagagacccccgtctggtagtccagacaccccagcatagaccagactggaatccgcga gctgaaagaatcaggctcccacaagccgagatcagaagagacccacgagctgagagggat ccacgaggatgcaacagcccagaacagcgtcacccaactgagtaccaaaaccagagatgg gctgtcagggagagggacagagagcaacaccgttcaccaatcaccgcgccatacccagga gatggagtcaacagaccaccgagggaccccagtcagagagactataatcgctacagtgct acagccttcaaccaccacacacacactcacccccggaaacgagacccagacccccgatgg atccctcccacccactccaagagggggagagagaggactgaccactga

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