Oncorhynchus nerka (sockeye salmon): 115119693
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Entry
115119693 CDS
T07952
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
one03016
]
115119693 (trub1)
Enzymes [BR:
one01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
115119693 (trub1)
Transfer RNA biogenesis [BR:
one03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
115119693 (trub1)
Prokaryotic type
115119693 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
115119693
NCBI-ProteinID:
XP_029504419
LinkDB
All DBs
Position
Unknown
AA seq
300 aa
AA seq
DB search
MAGSVTGVAVPKHSLSKLQSLNGLFAIYKKEGPTSADVLNTLKETLLKEAGVKDPNPRKR
KKQALKMGHGGTLDSAASGVLVVGIGNGTKMLSTMLAGSKKYMAVGELGKATDTLDATGK
VVHEKLYDHITREAFEEKLKQFTGDIMQVPPLYSALKKDGKRLSVLLKQGHEVEAKPARP
VTVYNLSLQDFTPPLFTLDVECGGGFYIRSLVDDLGKALSSCAHVRKLIRTKQGQFTLND
HTLQEEHWTLQHIVQSMQPCPGSEVTKEDGTKPSPNLGVKRALNAQVKGDKNGKDEKGEL
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggctggttcagtaactggcgtagctgtgcctaaacattctttatcaaaactacaatct
ttaaatggactttttgccatttataaaaaggaaggacctacgtctgctgatgttttaaac
acattaaaagagacactcctcaaagaggccggtgtgaaagatcctaatcccagaaaaagg
aagaagcaagctctgaaaatggggcatggcgggactctggacagcgcagcctctggtgtg
ctcgttgttgggattggaaatggaacaaagatgcttagtactatgcttgctggttcaaag
aaatacatggctgttggagagttggggaaagcaacagacacccttgacgccacaggcaag
gtggttcatgagaagctctatgatcacattaccagggaagcctttgaggagaagttgaag
cagttcactggggacatcatgcaggttcctccactgtactctgcactgaagaaggatggc
aagcgtctttctgtcctgctgaagcaaggccacgaggtggaagccaaacctgcacggccg
gtcacagtgtataacctgtcgctgcaggacttcactccccccctcttcactcttgatgtt
gaatgcggtggtggattttatatcagaagcttggtggacgacctgggaaaagcgctctcg
tcgtgtgcccacgtgaggaagctgatccggaccaaacagggtcagtttacccttaacgac
cacacgctgcaggaggaacactggacactacaacacatcgttcagtccatgcagccctgt
cccgggtcagaggtcaccaaggaggatggcacaaaaccaagcccaaacctgggggttaaa
cgggccctgaatgcccaggtgaagggggataagaatggcaaagatgaaaagggggagtta
taa
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