Oncorhynchus nerka (sockeye salmon): 115120681
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Entry
115120681 CDS
T07952
Symbol
abca4
Name
(RefSeq) retinal-specific ATP-binding cassette transporter isoform X1
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115120681 (abca4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115120681 (abca4)
Transporters [BR:
one02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
115120681 (abca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_22
AAA_23
AAA_15
Spore_coat_CotO
Motif
Other DBs
NCBI-GeneID:
115120681
NCBI-ProteinID:
XP_029505497
LinkDB
All DBs
Position
Unknown
AA seq
2342 aa
AA seq
DB search
MGTGSQVRLLLWKNWTLRKRQKMRFFMEIMWPVVLFIGLVWLRTANPLYRQHECHFPNKA
MPSTGILPWIQGIFCNANNPCFQYTTRGEGPGLVSNYNDSILARFYLDAQELLLSDPEFL
QLGRLWRELFTMSTFMDTLRTSPEQVSGRGLKVEDILKDDETLTSFLLRDVPLSEFVVNE
LVNAKIRPEQFVFGVPDLHLKDIACSQTLLEQFIIFPSRRGLYRVHSSICALTPQRLQTI
EDRLYANVDFFKLFRQLPRVLDNHSSGVDLHFWARILSATYEKLRELSERNSSKALVEVM
SPLLQSQVGSPPSFRQLMGAVSSLVCGYMEGGFSRVASFNWYEDNNYKAFMGINDSTRGG
QGQYTYDHTATPFCNDLMKELESNPITRIMWSSVKPMMMGKILYAPDSPAVRKIIRNANT
TFEELERLRTMGRAWEEVGPQVWAFFQDSVQMNMIRDTIRNPTVRDYIDRSLQDTEFSSK
HILNFLYNGPIEDRDYDMANFDWRNVFNFTDQVIRMMNQYGECLILNKFSGLNDEEQMTH
RALSLMGESKFWAGLVFMDTYPWTTKVPPHVRFKIRMDIDSVERTNKIKDRYWDPGPRAD
PVDDLRYVWGGFAYLQDMIEHGIIRTQTGKDWPLGVYLQQMPYPCYVDDLFMLTLNRCFP
IFMVLAWVYSVSMTVKSIVLEKELRLKETLKTMGVTNGVLWVTWFIDSFLMMAASTSLLT
VIIMGGKVLNYSNPLILFLFLLTFTTATIMQCFLLSVFFNKANLAAACSGIIYFTLYLPH
ILCFAWQDRITKDDKIMASLMSQVAFGFGTEYLSRYEEQGLGLQWDNIQTSPLEGDEYSF
LTSISMMALDTVLYAVLAWYLDNVFPGQYGIGRPFYFPILPSYWLNSRPPKPKELEKPRF
DNLVNQAEEKQKTNHEPGDEQKTKAPDEELPSCKHQDKRERLGKGKTEEEEEEKKKNQEE
KQNGEKEGQPSHAYFEGEPAGLVEGVCVQNLVKVFGRGQKPAVDGLSITFYESQITAFLG
HNGAGKTTTLSILTGMFPPTSGTASIYGKDIRTDMDTIRHSLGMCPQHNILFHHMTVEEH
ILFYSLLKGRSLSEAQLEVENMLEDLGLPHKRDEEAQNLSGGMQRKLSVAMAFVGGAKVV
ILDEPTSGVDPYSRRSIWDLLLKYRSGRTVILSTHHMDEADLLSDRVAIISQGRLHCCGS
PLFLKNCFGAGFYLTLVRRMKYEGPRTKMKCDCTDECSCKCSTCTTYKEESPQAKTPGRQ
MDGDLSSITGLVHHHVPEARLIEAIGQELTYLLPNQGFQPRAYASLFRELEETLSDIGLS
SFGVSDTSLEEIFLKVTADGEAKSGKTTQDQRLWQQTLRPSVGHNKVALYVDQSEEADGE
TQANRQGNSGGSEGSKGRGSRQVKGVCLVLKQLFALLIKRFHHATRSHKDFFAQIVLPAS
FVFVSLMFTTIVPPFGEYPSLTLSPWMYGRQFTFFSNERILDPEMRYFGEVLLNKPGFGT
RCMVDEPLEDFPCNNITTEWEMPLLNPALIDMLDGPEWTAVNPSPGCQCSTPRKLTMLPV
CPEGAGGITPPQRIQSTGDVVVDLTGRNISDYLVKTYPSLIKASLKSKYWVNEQRYGGIS
VGGQLPVLDVDPKTIQDAASQLGRLLNVTGGKYSKQTLKDIGTFLRYMESEYNVKVWYNN
KGWHAMVAFMNVANNAILRANLPKDASLDVYGITTINHPLNLTKEQLSEVTVLSTSVDAM
VAICVVFAMSFVPASFVLYLIQERVTQAKHLQFVSGVSPVIYWMANFLWDMVNYSISAAL
VVAIFMVFDKKCYTSPTNLQPLTALLMLYGWSVTPMMYPMSYIFSIPSTAYVSLSCINLF
IGINSSAITFILDLFDSTAALYKCNQLLKKMLLIFPHYCLGRGLIDMAMNQAVTDVYARF
GEDFSLDPYSWDFVGKNLVFMAVEGFVYFIMNILIQYRFFLDHWITDCKTDPIMEEDVDV
AQERERIYNGGSKNDILKIRDLTKTYMGKTKPAVDRICVGVSPGECFGLLGVNGAGKTTT
FKMLTGDTDVSSGEASVTGHSILTNILDVHQNMGYCPQFDAIDDLLTGREHLHLYARLRG
VPESEISKVADWAIQKLGLADYAGHTAGTYSGGNKRKLSTAIAMIGCPPLVLLDEPTTGM
DPHSRRFLWNSIMSVIQDGRAVVLTSHSMEECEALCTRLAIMVNGTFQCLGTIQHLKYKF
GDGYVVTMKIQASTPGCPPDLNPAEAFMESTFPGCVQREKHYNTLQYEIASSSLAKIFQL
VLANKDRLNIEDYTVSQTTLDQVFVNFAKQQSGEDDGMVLHPRAAGARRKEIKVTPLSCL
GK
NT seq
7029 nt
NT seq
+upstream
nt +downstream
nt
atgggtacgggcagtcaagtccgattgctgctgtggaagaactggacccttcgcaagaga
cagaagatgcggttcttcatggagattatgtggccagtggttctgttcattggactcgtg
tggttgaggacagctaaccctttataccgtcaacatgagtgtcactttcccaacaaggcc
atgccctcgactggcatccttccatggatccaaggaatcttctgcaatgccaacaaccca
tgcttccagtacaccaccaggggagagggccccgggctcgtctccaactacaacgattcc
atactggctcggttctacttggacgcccaggagcttcttctgagtgacccagagttcctg
cagctgggtcggctctggagggaactgttcaccatgagcaccttcatggacaccctgcgg
accagcccagaacaggtctcaggccgagggctgaaggtagaggacattctgaaggatgat
gagaccctgacgtcctttctcctaagggatgttcctctgtcagagtttgtggtcaatgag
ctggtcaatgccaagatcaggcctgagcagtttgtgtttggcgtccctgacctccacctg
aaggacattgcctgcagtcagaccctgctggagcagttcatcatcttccccagccgcagg
gggctgtacagggtgcacagcagcatttgtgccctcacaccacagagactacagaccata
gaggacaggctctacgccaacgtggacttctttaaactcttccgtcagcttccccgggtg
ttggataaccactccagcggtgttgacctacacttctgggccagaatactctctgccacc
tacgaaaagctgcgagagttgtcagagaggaacagctccaaagcgctggtggaggtgatg
tcccccctgctccagtcccaggtgggctctcccccatctttcagacagctgatgggggct
gtgtccagcctggtgtgtggctacatggaggggggcttctctcgggtggcctccttcaac
tggtatgaggacaacaactacaaggccttcatggggatcaacgatagcacccggggagga
cagggacagtacacctacgaccataccgccactccgttctgtaatgatctgatgaaggag
ctagagtccaatcccatcaccaggatcatgtggagctctgtcaagcccatgatgatgggg
aagatcctctacgcacccgactccccagccgtcagaaagatcatcagaaacgccaacacc
acatttgaggagctggagaggctgaggaccatgggtcgggcctgggaggaggtgggccct
caggtctgggccttcttccaggacagcgttcagatgaacatgatcagggataccatacgg
aatcccacggtgagggactacattgacaggagtctacaggacacagagttctcctcaaaa
cacatcctcaacttcctgtacaacgggccaatagaagacagggactatgacatggccaac
tttgattggaggaatgtcttcaacttcacagaccaagtcatccgtatgatgaaccagtat
ggagagtgtctgatcctgaataaattctctgggctgaacgatgaggagcagatgacccac
agagctctgagtctgatgggggagagtaagttctgggctggcctggtcttcatggacacc
tacccctggaccaccaaggttccaccccacgtccggttcaagatccgcatggacatcgac
tcagtggagcgcaccaataagatcaaggacagatactgggaccctggtcccagggccgac
cccgtggatgatctccgttacgtgtggggggggtttgcctatctgcaggacatgatagag
catggcatcatcaggacccagacaggcaaggactggcccctcggtgtctacctacaacag
atgccgtacccatgctacgtggacgacctcttcatgctgacattgaaccgttgcttcccc
atcttcatggtgctggcatgggtctactcagtgtctatgaccgtgaagagcatcgtcttg
gagaaggagctcaggctcaaagagaccctgaagaccatgggggtcaccaatggggttctg
tgggtcacatggttcatagacagcttcctcatgatggctgccagcacttccctgctcact
gtgatcattatgggcggtaaggtgttgaactacagcaaccctctgatcctgttcctgttt
ctgctaaccttcaccacggccaccatcatgcagtgtttcctactcagtgtcttctttaac
aaggccaacctggctgcagcctgcagcggtatcatctacttcaccctctacctgccccac
atcctctgctttgcatggcaggaccgcatcaccaaggatgacaagatcatggcgagcctg
atgtcccaggtggcgtttggctttgggacagagtacttgtcccgttatgaggagcagggt
ctgggtctgcagtgggacaacatccagaccagccctctggagggggatgagtactccttc
ctcacctccatctctatgatggccctggatactgtactctacgccgtccttgcctggtac
ctcgacaacgtcttcccagggcagtatggaattggtcggccattttattttcccatcctg
ccctcctattggctcaactccagacccccaaagccaaaagagttggagaaacccaggttt
gacaacctggtaaaccaggctgaagagaagcagaagaccaatcatgaaccaggtgacgag
cagaagactaaggcaccagatgaggagctgccatcctgcaaacaccaggacaaacgagag
aggctggggaaggggaaaacagaggaggaggaggaggagaagaagaagaaccaggaggaa
aaacaaaatggagaaaaagagggtcagcccagccatgcctactttgagggggaaccggca
ggactggtggagggtgtgtgtgttcagaacctggtcaaggtttttggtaggggacaaaaa
cctgcggtagacggactgagcatcaccttctatgagagccagatcactgctttcctgggg
cataatggagctgggaagaccaccaccttgtctatcctgacggggatgttccctcccacc
tctgggacagcctccatctatgggaaggacatccggacagacatggacaccatcaggcac
tctctgggcatgtgtccccaacacaacatcctctttcaccatatgaccgtagaagaacac
atcctgttctacagcctgctgaaggggaggtctctgtctgaggctcagctggaggtagag
aacatgctggaggatctgggcctgccccacaagagagacgaggaggcacagaacctctca
ggcggcatgcaaaggaagttgtctgttgctatggcgtttgtgggcggtgccaaggtggtg
attctggacgagcccacatcgggggtggacccctactccagacgatctatctgggaccta
ctactcaagtaccgatcaggacgtacagtgattctgtccactcaccacatggacgaggct
gacctgttgagtgaccgtgtggccataatctctcagggtcgtcttcactgctgcggctcc
ccgctcttcctcaagaactgcttcggtgccgggttctacctcaccctggttcgacgaatg
aaatacgagggacccaggaccaagatgaagtgtgactgtactgatgagtgttcgtgtaaa
tgctccacctgtaccacgtacaaagaagagtcacctcaagccaaaaccccgggcagacag
atggacggtgacttgtcaagcatcacagggctggtccaccaccatgtcccagaggcccgt
ttgatcgaggcaatcggccaggagttgacctacctgctgcccaaccagggcttccagccc
agggcctacgcctccctcttcagagagctggaggaaaccctctctgacatcggcctcagc
agcttcggggtctccgacacatcactggaggagatattcctgaaagtgacagcggacggt
gaagccaaatctggcaaaactacacaagaccagagattgtggcagcagacacttcgaccc
agtgtaggacacaacaaagtagcactttatgtcgaccaatctgaagaggcagacggggag
acccaggccaacaggcagggcaattctgggggctcggagggcagcaaggggcggggctct
agacaggtcaaaggtgtctgtctggtcctgaaacagttatttgccctgctcatcaaacgg
tttcaccacgccacaagatcacataaggacttctttgctcagatagttttgcctgccagt
tttgtgttcgtatcactgatgttcactacgatcgtacctccgtttggagagtaccccagc
ctgacccttagtccctggatgtatggacgacagttcaccttcttcagtaacgagcgtatc
ctggaccctgagatgaggtactttggagaggtgctgctgaacaagcctggctttgggact
cgctgcatggtggatgaacctctggaggatttcccatgtaataacatcacaacggagtgg
gagatgccgctactgaaccctgctctgatagacatgttggatggaccagagtggaccgca
gttaacccttccccaggctgccagtgtagtacccctaggaaactcaccatgctgcctgtc
tgccctgagggagcaggggggataacaccaccacagaggatccagtcgacaggtgatgtt
gtggtggacctaacaggcaggaatatctctgattacctggtgaagacttacccctctctc
atcaaagccagtttgaagagcaaatactgggtgaatgaacaaaggtatggaggtatatct
gtcgggggacagcttcctgtgttagatgtggaccctaagaccattcaggacgcagcgtca
cagctgggacgactgctcaatgttactgggggtaaatactccaaacaaactctgaaggac
ataggaaccttcctccgatacatggagagtgaatacaatgtcaaggtgtggtacaacaac
aagggctggcatgccatggtggccttcatgaacgtggccaacaacgccatcctcagagcc
aacctgcccaaagatgccagcctggatgtatacggcatcaccactatcaaccaccctctc
aaccttaccaaggaacaattgtctgaagtcactgttctgagcacctcagtggatgcgatg
gtggctatctgtgttgtcttcgccatgtcctttgtcccagcctcctttgtgctctacctc
atccaggagagggtgacccaggccaaacacctccagttcgtcagcggggtcagtcccgtc
atctactggatggccaacttcctctgggacatggtgaattactctatcagtgcagcactg
gtggtggctattttcatggtctttgacaagaagtgctacacgtcgccaaccaacctccaa
cccctgacagccctgctcatgctctatgggtggtctgtgactcccatgatgtaccccatg
tcctacatcttcagtattcccagcacagcctacgtctctctgtcctgcatcaacctgttc
attggcatcaacagcagtgccatcaccttcatccttgacctgtttgacagcacagcggcg
ctgtataagtgtaaccagctgctgaagaaaatgctgctgatcttcccccactattgtctt
ggccggggtctgatcgacatggctatgaatcaggctgttactgacgtctatgcccgcttt
ggcgaggacttcagtctggacccctacagttgggactttgtagggaagaacctggtcttc
atggctgttgagggctttgtctatttcatcatgaacatcctgatccagtaccgcttcttt
ctggatcactggatcacagattgtaagacggatcccatcatggaggaagacgtggatgtg
gcccaggagagagaacgcatctataatgggggaagcaagaatgacatcttaaagattaga
gacctcaccaagacatacatggggaagacaaagccagctgtggacaggatctgtgtggga
gtgtcacctggggagtgctttgggctcctgggtgtgaacggagcagggaagaccaccacc
tttaaaatgctgaccggagacactgatgtcagctcaggagaagcctctgtcactggtcac
agcatccttaccaatatcctggacgtgcaccagaacatgggctactgcccccagtttgat
gccatagatgatctgctgactggcagagagcacctccatctgtatgcccgcctcagaggg
gtgcctgagtccgagatcagcaaggtggcagactgggcaattcagaagctgggtctggct
gactatgctggccacacagccgggacctacagcggcggcaacaagagaaaactatccacg
gccattgccatgatcggctgtcctcctctggtcctgctggacgagcccacgacaggcatg
gacccccactcacgtcgtttcctgtggaactccataatgagtgtaatccaagatggccga
gcagtggtcctcacctcacacagtatggaggagtgtgaggctctgtgtacccgtctggct
attatggtcaatggcaccttccagtgtcttggtaccatccagcacctcaaatacaagttt
ggtgatggttacgtggtcactatgaagatccaggcctccacaccaggttgtcccccagac
ctgaacccagccgaggccttcatggagagcaccttccctggctgtgtccagagggagaaa
cactacaacactctgcagtatgaaatcgcctcttcctccctggctaagatcttccagctg
gtcctggccaacaaggaccgcctcaatatagaggactacaccgtctcccagacgacacta
gatcaggtgtttgtgaactttgccaagcagcagtcaggagaggacgacggcatggtgctg
cacccgagggccgctggggcacggagaaaagaaatcaaggtcacacccctaagttgtctg
gggaaatga
DBGET
integrated database retrieval system
