Oncorhynchus nerka (sockeye salmon): 115120893
Help
Entry
115120893 CDS
T07952
Name
(RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
KO
K21112
synaptopodin
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115120893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
115120893
NCBI-ProteinID:
XP_029505738
LinkDB
All DBs
Position
Unknown
AA seq
1210 aa
AA seq
DB search
METERGHMSVRRGVSWSPGGGRKPLQRVHGGNTDTGKRESDASSERRDYKAIRGQATSTS
TNQLTRKTNLTRSASLSEKELKEARVRSQIIAAQLTVPSGCSNSRGVQLFNRRKQRVDAF
TLESCGKRGEERDGDNRNNNLTWEGEREGPSGGTETDRQLNWKKGSETKPPLWSPPFGSE
VTGSDIMEDPGDEHIYEEVDVIQERHFQPVNEREEEEEERSGEREREEIYEDIEGEVKDE
IISVNDNNTGPVREEVGMNRGSYTYPTAPPESWHNGFHSTQGSAGEIQNGGRASMSLSRQ
TPTIVNRTARPFFSPPTVQLKSPEARNPVMDNNIPPAPSYLTSTSPPAPSYSTPPLPAFT
ATRPVAFSPPSCPVTFSPPPPLSSCPMPPLPAFPIHPPPPSQSLSSPPPKSTVMFPRSTP
VPQYNPAPTAAPVSQYLPPNPLVTQYIPPPTSPRPNTFVPFTPQPIGQKNQQQPIKTGIL
EEGAAIRRSSTARKSMFTFKEKPVMAPNPELLSLVQGNDDRKKHGLRSVPDSAPEEELLA
LGAEASNFLAKEEVKAEAAKVPEWSSCLKSSRTREPRGQHQPEQTLTNASGKGAELFAKR
QSRMEKYVVEKQNVSIGGDGQMRSPSPTASLPPSWIYPSNMPGRVKAIANNTDLSARLTL
TLQTPQPGNRRPSQQASTPAPVLAEPTLEYGCTKIEMDLSRHQPYQLNSSLFIFNPVQDS
TSTVLSALPRVAPPPPKPLISSEAYTRQASLPSSNPQSHNYNSLPRFRPTMSPSLQPPSG
GIRGGDNYPPQHGGTPQLRDPRITSPVSAFSPERVASPRSSVQAPRPTFSAKRAGIEPQM
RKESPPTLTTTPTRTPQFTRRFSSPEGPPTSRPLHQATATSPASPPWETRCKSPTVVNQT
TKPFSTASLSRPKQSTTTSPISPVSPWGSRCPSPNINQTTKPFSTASLSRLKQSTTTSPI
SPVSPWGSRCQSPNINQTTKPFSTASLSRPKQFTTTSPISSVSPWGSRCQSPNINQTTKP
FSTTISNSSSSRPSHQGTITSPLSPSPLSPPWGSRCQSPIISPNNSKANHRLLAKNIINA
AKRKNSPSPGALSGHNLPISPLGDNTTHQHHQGYDHQHHYSSSKPPFSPYQPRAMGCQSP
PFASPPPTPTGVIRSPVRLYNTRSLTDSDASVESEDSELRSPGLQRTHNTCPRGWGGSLR
VKRGSVGTDL
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atggagacagagaggggtcatatgtctgtgaggagaggggtaagctggagcccaggtgga
gggaggaagccccttcagagggtgcatggcgggaacacggacaccggcaaaagagagagt
gacgcatcttcggaaaggcgggactacaaagcgatccgaggacaggcgacatcaacctcc
accaatcagctgactcgaaaaaccaacctgacgcgtagtgccagcctatcagagaaggag
ttgaaggaggcgagggtgaggtcacagatcatcgcggcccagctgaccgtcccgtctggc
tgctccaactcccgcggagtccagctcttcaaccgccgcaagcagagggtcgacgccttc
acgctagagagctgcgggaaaagaggagaggagagagacggagacaacaggaacaacaac
ctgacatgggaaggggagagggagggtcctagtggagggacagagacagacagacaactg
aactggaagaagggcagcgagacaaaaccaccactctggtcgccaccttttggaagtgag
gtcacaggaagtgacatcatggaggacccaggtgacgagcacatctacgaggaagtggac
gtgatacaagagagacacttccagccagtgaacgagagagaagaggaggaggaagagagg
agtggagagagagaaagagaggagatatacgaggatattgagggtgaagtgaaggatgag
attatatcagtaaatgacaacaacactggtccagtcagagaggaagtggggatgaatagg
gggtcatacacataccccacagctccccctgagagctggcataatggcttccacagcacc
cagggctctgctggagagatccaaaatggcgggcgagcttctatgtccctgtccagacag
acccccaccatcgtcaaccggacagccagacccttcttctccccacccaccgtacagctt
aagtccccagaggccaggaatcctgtcatggataacaacatacctccagctccctcctat
ctgacctccacttctcccccagccccctcctactccactccccctctccctgctttcact
gccactcgccctgtcgccttctcccctccgtcttgccctgtcaccttctcccctcctccc
cctctttcctcatgccccatgcctcctctcccagccttccccatccatcctcctcctccc
tcccagtctctctccagtcctcctcccaagtctaccgtcatgttccctaggtctacacca
gtcccccagtacaaccctgctcctacagctgccccagtgtcccagtatctaccccccaac
cctcttgtcacccaatacatccctcctccaacatcccccagacccaacacctttgtcccc
ttcacccctcagcctattggtcaaaagaaccagcagcagccaatcaaaacgggcattctg
gaggaaggggcggccatcagacgatcgtcaacagccaggaagtccatgttcacctttaag
gagaagcctgtcatggcacccaaccctgaactcctctctctggtacaggggaacgatgat
aggaagaagcacggcctccgctccgttcccgactcagccccagaggaggagctgctggct
ctgggggccgaggcctctaacttcttagccaaggaggaggtgaaggcggaggctgccaaa
gtgccggagtggtcctcctgtctcaagagctccagaaccagggaacccagggggcagcac
cagccagagcagaccctgaccaacgcatcagggaagggggccgagctgttcgctaagcgc
cagtccaggatggagaagtacgtagtggagaaacagaatgtgtccattggtggagatggc
cagatgaggtctccatctcccaccgcgtctctgccgccatcttggatctatccatctaat
atgcctggccgggtcaaagctatcgctaacaacactgacctcagcgccaggctgacactg
accctccagacccctcagcctgggaacaggaggcccagccagcaggcttcaaccccagcc
ccggtccttgcagaaccaaccctggagtacggctgcactaagatagagatggacctctcc
aggcaccagccctaccagctcaactcctccctgttcatcttcaacccagtccaggactct
accagcaccgtgctgagcgctctgccccgagtggcccctccaccacccaaacccctgatc
tcatctgaggcctacaccaggcaggcctccctgccctcctccaaccctcagtcacacaac
tacaacagcctgccccgcttcaggcctaccatgtccccgtcacttcagcctccatcagga
ggaattagaggtggggataattatcctccacaacacggggggactccacagctgagggac
cccaggatcacctctcctgtctctgccttctctccagagagagtggcctctcctcggtcg
agcgtccaggcacccagacccaccttctctgccaagagggcagggatcgaaccccagatg
aggaaggagtcccctccgaccctcaccaccacccccaccaggacaccgcagttcacccgt
cggttcagcagcccagagggaccccccacttccaggcccctccaccaggcgacagccacc
tcccctgcctccccaccctgggagacgaggtgcaagtcacccacggtggtcaaccaaacc
accaaacccttctccacagcctctttatccaggcctaaacaatccactaccacctcacct
atatcacctgtatctccctgggggtcccgctgtccatcccctaacatcaaccagacaacc
aaacccttctccacagcctctttatccaggcttaaacaatccactaccacctcacctata
tcgcctgtatctccctgggggtcccgctgtcaatcccctaacatcaaccaaacaaccaaa
cccttctccacagcctctttatccaggcccaaacaattcactaccacctcacctatatcg
tctgtatctccctgggggtcccgctgtcaatcccctaacatcaaccagacaaccaagcct
ttctccaccaccatctccaactcttcctcttccagaccctctcaccaaggcaccatcacc
tctcctctctccccctcgcccctatcccctccctggggttccagatgccagtctcccatc
atcagccccaacaactccaaggcaaaccatcgcctgttagccaagaacatcatcaacgcc
gccaaacgtaaaaacagcccgtccccaggtgctctgagcggccacaacctcccaatctcc
ccactaggtgacaacaccacccaccagcaccaccagggctatgaccaccagcaccactac
agcagctccaaaccccccttcagcccctaccagcccagggccatggggtgccagtctccc
cccttcgccagccctcctcccacccctacaggggtgatccggtccccagtaaggctctac
aacaccaggtccctcactgactcggatgcttcggtggagtcggaggactctgagctgagg
tctccaggactgcagcgtacccacaacacctgtccccggggctggggcggcagcctgagg
gtgaagaggggtagtgttggcaccgacctatag
DBGET
integrated database retrieval system
