Oncorhynchus nerka (sockeye salmon): 115121038
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Entry
115121038 CDS
T07952
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04140
Autophagy - animal
one04142
Lysosome biogenesis
one04145
Phagocytosis
one04148
Efferocytosis
one05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
115121038
04142 Lysosome biogenesis
115121038
04140 Autophagy - animal
115121038
04148 Efferocytosis
115121038
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115121038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115121038
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115121038
Hops complex
115121038
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-RING_11
DUF5600
zf_RING_Vps8
zf-RING_Vps41
zf-RING_16
zf-C3HC4_2
zf-ANAPC11
aq_1631
DUF1664
zf-rbx1
zf-RING_UBOX
zf-C3H2C3
DUF4446
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
115121038
NCBI-ProteinID:
XP_029505918
LinkDB
All DBs
Position
Unknown
AA seq
986 aa
AA seq
DB search
MSSILDEYEDSLNSRHPVHHSSRLSAANIGMTHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLAKPDRPNQVELGRKEDSRVHKLFLDPTGSHLVISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLRTETNTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFKQVHSLEEDGRPAPVCCIEVERGPESKVVIIATTRKRLFQFVGRVA
EGSEQQGFSAIFSQNQELLPSFQEFPFNMGYSEITFYTSKLRSCPKAFAWMMGNGVLYGQ
LDYIRPDSLLSDVQVWDYTPDIDFSFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVYE
DVFPDKFGTLKKMIKDPAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEHCFQDKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSEKTQITLLVTWLTELYLNYLGLLQSDEGKHGVFQETRDEFRKFFSSSKHKECL
YNNRTTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYSAALEVLSKHCDEKLFY
KFSPILMQHIPKKVVDAWIQMGSRLEPKKLIPALVNYSQMGSTQQVNETIRYMEFCVYQL
TVTEEAIHNYLLSLYAKYKPDSLLWYLEQAGSHLSDIHYDLKYALRLCAEHGYLQACVLV
YKIMELYEEAVDLALQVDVDLAKTCADLPEDDEELRKKLWLKIACHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIDELKQEMEEATESAKRIRED
IQEMRNKYGVVENQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLSTYKQTKLG
ELQKRLAAATQTSKSRHRPAPKEKEEGGDTASLGKGSAGVSREQIKSDIDDIIACECVYC
GELMIKSIDKPFIDPQKFEEEKSSWL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatcctggatgaatacgaggactcgctgaacagcaggcaccctgtgcatcac
agtagccgcctgtctgctgccaacatcggcatgacacactccgggttcgtgaatgtgaga
ctggaggaggagaagccgatattcaacaaacagaggattgatttctcacccccagagaag
ataaaccactttgctgtatgcaacaatcagctatgcatgagtttagggaaggacactctg
ctgaggattgaccttgctaagccagaccggcccaaccaggtagaactggggaggaaggag
gacagcagagtacacaagctcttcctggaccccacagggtcccacctggtgatttctctc
agtaccagcgagtgtctgtatctgaacaggaacacccagaaggtgaggtctctgtcccgc
tggagaggacacctcatagagagtgtaggctggaacaagctgctgaggacagagaccaac
actgggcccatcctagtgggaaccagccagggaatcatcttcgaggctgagatctctgct
tcagagggaagcctgtttaacaccaaccccgaccagtacttcaaacaggtccactccctg
gaggaggacgggaggcctgctcctgtgtgctgtatagaggtggaacgaggtcccgagtct
aaagtcgtcatcatcgccaccaccaggaagcgtttgttccagttcgtaggtcgtgtggcg
gaggggtccgagcagcaaggcttcagcgccatcttctcacagaaccaggagctgctgccc
agcttccaggagtttccgtttaacatgggctacagtgagatcaccttctacacctccaag
ctcaggtcctgccccaaggccttcgcatggatgatgggtaatggagttctctacggtcag
ctggactacatcaggccggactcgctgctcagtgacgtgcaggtgtgggactacacccca
gacatagacttcagtttcaacaagcccatctccatcgtgttgactcagttccactttcta
ctcctcctcccagaccgcgtcaaggccatctgcaccctcaacgggcaggtggtgtacgag
gatgtgttccctgataagttcggcactctgaagaagatgattaaggacccagcaggaggc
ctggtgtggatctatactgagaaggccgtctttagataccacatccagagagaagccagg
gatgtgtggcagatgtacatgagcatgaacaagtttgacctggctaaggagtactgccgg
gaccggccagagtgcatggacatggtcctggctaaagaggcagaacactgcttccaggac
aaacgttacctggagagcgctaagtgctacgctctgacccagaattactttgaggagatt
gcgttgaagttcatcgaggcgaaacaggaagaagctctgaaagagttccttctgaagaaa
ctcaacaacctgaagcagagtgagaagacccagatcaccttactggtcacctggctgact
gagctctacctgaactacctggggcttctccaatcagacgaggggaaacatggggtgttc
caggagacgcgggatgagttccggaagttcttcagtagctccaaacacaaggagtgtctc
tataacaaccgaacgaccatctatgacttgctggctagccacggcaacgtggacgacatg
gtctacttctctgtcatcatgcaggactatgagagggtgatctcccaccactgtcagcat
gatgactacagcgccgccctggaggtgctctctaagcactgcgacgagaagctcttctat
aagttttcccccatcctcatgcaacacatacctaagaaggtggtggatgcctggatccag
atgggtagccggctggaacctaagaagctgatcccagccctggtcaactacagtcagatg
ggttcaacacaacaggtcaacgagaccatccgttacatggagttctgtgtctaccagctc
actgtgacagaagaggccatacacaactacctgctgtctctctacgccaagtacaaacct
gatagtctcttgtggtacctggaacaggctgggtcccacttgtcagacatccactatgac
ttaaagtatgccctgaggctgtgtgctgaacatggttacctccaggcctgcgttctggtc
tataagatcatggagctgtatgaggaagctgtcgatctggccctacaagtcgatgtggac
ttggccaagacgtgtgctgacctgcctgaggatgacgaggagttgaggaagaagttgtgg
ctgaagatcgcctgtcacgtggtgcaagaggagaaggatgtgaagaaggccatgaactgc
ctgtccagctgtaacctgctcaagatcgaagacatcctgcccttcttcccggacttcgtc
accatagaccactttaaggaggctatctgcagctctttagaggagtacaaccagcatata
gacgagctgaagcaggagatggaggaggcgacggagagcgccaagcggatcagagaggac
atccaggagatgaggaacaagtacggggtggtggagaaccaggagaaatgtgctgcctgc
gacttccccctcctcaacagacccttctatctgttcctctgtggtcacatgttccactac
gactgcctcttccaggaggtgacccctcacctgtccacctacaagcagactaaactaggt
gagctgcagaagaggttggctgcagccactcagacctccaagtctcgccaccgccccgcc
cccaaggagaaggaggaggggggcgacaccgccagcctggggaaaggaagcgccggggtc
agccgagagcagatcaagtccgacatcgatgacatcatcgcctgcgagtgcgtgtactgc
ggcgagctgatgatcaagtcgatcgacaagccgtttattgatccacagaagtttgaggag
gagaagtccagctggctctga
DBGET
integrated database retrieval system
