KEGG   Oncorhynchus nerka (sockeye salmon): 115121701
Entry
115121701         CDS       T07952                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03082  ATP-dependent chromatin remodeling
one03083  Polycomb repressive complex
one04110  Cell cycle
one04330  Notch signaling pathway
one04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    115121701
   03083 Polycomb repressive complex
    115121701
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    115121701
   04350 TGF-beta signaling pathway
    115121701
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    115121701
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:one03036]
    115121701
Enzymes [BR:one01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     115121701
Chromosome and associated proteins [BR:one03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     115121701
   HDAC complexes
    Sin3A-HDAC complex
     115121701
    BRAF-HDAC complex
     115121701
    REST complex
     115121701
    SHIP complex
     115121701
    MiDAC complex
     115121701
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     115121701
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    115121701
  Chromatin remodeling factors
   NuRD complex
    115121701
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 115121701
NCBI-ProteinID: XP_029506689
LinkDB
Position
Unknown
AA seq 485 aa
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ASGEEMTKYHSDDYIKFLRSIRPDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFFTTDRVMTASFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
AIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPMLML
GGGGYTIRNVARCWTYETAVALDSIIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQIQAIPEDAPHPDSGDEEDEDPDKRISIRAHDKRIACEE
EFSDSEDEGQGGGGRRNAANHKKTKRVKTEEEKEETEEKKEVKDEDKDAEEKMDTTGPKE
ETKTC
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcgctgtcgtctgcaggaggaacaaagaagaaagtttgctattattatgacggcgac
gtgggtaattattactatggtcagggtcatcccatgaaaccccacaggatccgtatgacc
cacaacctgctgctcaactatggactgtacaggaagatggagatctacagaccccacaag
gccagtggagaggagatgaccaagtaccacagtgacgactacatcaagttcctgcgttcc
atccggccagacaacatgtcagaacacagcaaacagatgcagagatttaatgtgggagag
gactgcccagtgtttgacggcctgtttgagttctgtcaactctcaacgggaggctctgtc
gcgggggcagtgaagctgaacaagcagcagacggacatcgccatcaactgggccggagga
ctccatcatgccaagaagtctgaggcctctgggttctgctacgtcaacgacatagtcctc
gccatcctggagctgctcaagtaccaccagagggtgttgtacatagacatcgacattcac
catggagacggagtggaagaggctttcttcaccacagaccgggtcatgacggcctccttc
cacaagtatggagaatacttccctggcaccggagacctgagggacattggagcagggaag
gggaagtactatgctgttaactaccctctcagagacggcatcgacgatgagtcttacgaa
gccatcttcaaacctgtgatggctaaagtgatggagatgttccagcccagtgcagtcgtg
ttacagtgtggagccgactctctctcaggagacagactgggctgtttcaacctcaccatc
aaaggtcatgctaagtgtgttgagtacataaagagtttcaacctgcctatgttgatgttg
ggaggtggaggttataccatccgtaacgtggcccgctgctggacctacgagaccgccgtg
gctctggacagcatcatacctaacgagctgccatacaacgactactttgaatactttggt
cctgacttcaagctccacatcagcccgtctaacatgaccaaccagaacaccaatgattac
ctggagaagatcaaacagaggctgtttgagaacctgcgcatgctgccccacgccccgggg
gttcagatacaggccatcccagaagacgctccacacccggactctggagatgaggaggac
gaggaccctgacaaacgcatctccatcagggcccatgataagaggattgcctgtgaagag
gagttctctgactctgaggatgagggacagggaggagggggaaggaggaacgctgccaac
cataagaagaccaaacgagtcaagactgaggaggagaaagaggagaccgaggagaagaaa
gaagtgaaagatgaggataaagacgctgaagaaaagatggacacaacagggccaaaagaa
gaaactaagacgtgttga

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