Oncorhynchus nerka (sockeye salmon): 115122360
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Entry
115122360 CDS
T07952
Symbol
smc5
Name
(RefSeq) structural maintenance of chromosomes protein 5
KO
K22803
structural maintenance of chromosomes protein 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
one03400
]
115122360 (smc5)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
115122360 (smc5)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
AAA_13
Tuftelin_like
CEP135_TSGA10_CC
AAA_29
FKBP15
IFT57
GCN5L1
AAA_25
Motif
Other DBs
NCBI-GeneID:
115122360
NCBI-ProteinID:
XP_029507428
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Position
LG4:17519141..17548850
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AA seq
1074 aa
AA seq
DB search
MASAGKKKRISNVTNTQPSNNGAGSSSGTVGDGQVSGFVEGSIIRITMQNFLTYDHSIVH
PGPNLNMIVGANGTGKSSIVCAICLGLAGKTAILGRGDKVGLYVKRGCNKGSVEIVLHKA
KGNLVINREIHVENNQSTWLLNGKHSSQKTVEEEVKALQIQVSNLCQFLPQEKVGEFAKM
TKIELLEATEKSVGPPEMYEFHCELKTFRTKERELENVCKEKASALEKFKQRNERNKHDV
ERYYEKKRHLDNIKMLEKKKPWVEYETARKELEGVKKSREDAKKQLKTVRESQAPMLKKI
QHIDSQLRPIENQMKDKTVSIREASQKCKQKQDQLDRKHREIEDIKQAFSLKQTEAADRQ
KRISNTRRMIDDLRAELANVGDQSDVTPRINAVNAELRRIQEEKAKMEGEKADMRREKDN
LNGECRLLKNRLRSLDDMMKIKEEKLRGRSKDTYAAVQWLRQNKHIFSGNVYEPMMLVIS
VRNPNHAKYVENHIPFNDLRAFVFQKREDMEKFMMEVRDSQNLRVNSVFAPEESCATRAP
SRPIESLKRFGFFAYLRELFDAPEEVMSYLCNQYKVHDVPVGTDQTKAMIKTVIEEPYLK
VLYTAEEKYSLKKSFYSGKTSTSNSAVRPSQYLTLAVDAEEKCQLEEQIRTAEKSMQAID
VQMSAMQERTAKLDHCDNELRAQKKGLSEMKGKKRQLEQKISTKQDSLRQMEQGGIDLQK
AEEETKAQISAVNSQKVAIVAEFMAHMKLRAKLSMEKVYMALETVGMTAEKTKLETDCRE
GSAELRVLEQACAMLEQRKARLLEMCKGLMRRAREICNMDPGESAVPPDLHTAFSQLPDT
MDEIDAMLNEERSRAECFTGLSENVVDEYNRREQEIKNLEKELDEKSNALKTYRQNISEA
KERWLNPLKQLVEQINDKFSDFFRSMQCAGEVDLHSENEEEYDKYGIRIRVKFRSSTQLH
ELTAHHQSGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPVNERRVFDIVVRTACKE
TTSQYFFITPKLLQNLQYADEMTVLCVHNGPHMLPPNKWDEKAFTRRCLRRKGK
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcgggcaagaaaaaacgtataagtaacgtaacgaacacacaaccttcaaat
aatggagcaggttcgtcctctggtaccgttggagatggccaggtgtctggatttgtcgaa
ggatccataattcgcatcacaatgcaaaacttcctgacctatgaccactccatagttcac
cctggaccaaacctaaacatgattgtgggggccaatggaactggcaagtccagtattgtc
tgtgccatatgtctgggtctggcaggaaagactgccatcctgggcagaggggacaaggtt
gggctgtatgtgaagcgtgggtgcaacaaaggatcggttgagattgtactgcacaaggcc
aaggggaacctggtgatcaatagagagatccatgtggagaataaccagtcgacgtggttg
cttaatgggaaacactccagccagaagactgtggaggaggaggtgaaggctctacagatc
caagtgagcaacctctgccagtttctgccacaggagaaggtgggtgagtttgccaagatg
accaagattgagctgctagaggccacagagaagtcagtgggacctccagagatgtatgag
ttccactgcgagctcaaaaccttccgcaccaaagagagggaactggagaatgtgtgcaag
gagaaggccagcgccctggagaagttcaagcagaggaacgaacggaacaagcacgacgtg
gagcgctactacgagaagaagagacacctggacaacataaagatgctggagaagaagaaa
ccctgggtggagtatgagactgcccgtaaggagctggagggggtgaagaaatccagggag
gacgccaagaagcagctgaaaaccgtgagggagtcccaggcccccatgctgaagaaaatc
cagcacatcgacagtcagctgaggcccatcgagaaccagatgaaggacaagacggtcagc
atcagggaggcctctcagaagtgtaaacagaaacaggaccagctggaccggaagcacaga
gagattgaggatatcaagcaggccttcagcctgaagcagacagaggcggcggaccggcag
aagcgaatcagcaacacccggcgcatgattgatgacttgagggcggagctggctaacgta
ggcgaccaatcagacgtgacgccgcggatcaatgcagtgaatgcggagctgaggcgcatc
caggaagagaaagcaaagatggagggagaaaaggccgacatgcgtagggagaaggacaac
ttgaacggagagtgtagactgttgaagaacaggctgaggagtctggatgacatgatgaaa
atcaaggaggagaagctgagagggcgctccaaggatacctacgctgccgtccagtggctg
aggcagaacaaacacatcttcagtggcaatgtctatgaacctatgatgctagtgattagt
gtccgcaaccctaaccatgctaaatacgtggagaaccacattccattcaatgacctgcga
gcctttgtcttccagaagagggaagacatggagaagtttatgatggaggtgcgtgacagc
cagaacctgagggtgaattcagtcttcgctcctgaggaatcctgcgccacccgcgctccc
tcccgacccatcgagtctctgaagcgttttgggttctttgcgtacctgcgggagctcttt
gatgctccagaagaggttatgagctacctctgcaaccagtacaaggtgcacgatgttcct
gtgggaacggaccaaaccaaagccatgatcaagacggtgattgaggagccctacctgaag
gtgctttacacagctgaggagaagtactccctgaagaagtccttttactcaggcaagacc
agtaccagtaactctgccgtgcggccctcccagtacctcaccttggcagtggacgccgag
gagaaatgccagctggaggagcagatcaggactgctgaaaagagcatgcaggccattgat
gtccagatgagcgccatgcaggaacgtactgccaagctggatcactgtgacaatgagcta
cgggcccagaaaaaggggctctcggagatgaagggtaaaaagagacagttggaacagaag
atcagtaccaagcaggacagtcttcggcagatggagcaggggggcattgacctacagaag
gctgaggaggagaccaaggcccagatctcagcagtcaactcccagaaggtggccattgtg
gctgagttcatggcccacatgaagctgagggctaagttgagtatggagaaggtgtacatg
gctcttgagaccgtgggcatgacagcagagaagaccaagctggagactgactgcagggag
ggctcggccgagctcagggtcctagagcaagcgtgtgccatgctggagcaacgcaaggcc
cgtctgttggagatgtgtaagggcctaatgaggagggccagggagatctgtaacatggac
cctggggagagtgctgtacccccagacctacacacggccttcagccagctgcccgacact
atggatgagatagacgccatgttgaatgaggagaggtccagggcagagtgcttcactggc
ctcagtgagaatgtggtggatgagtacaacaggagagagcaggagatcaagaacctggag
aaagaactagatgagaagagcaatgccctgaaaacctacagacagaacatatcagaggca
aaggagcgctggctgaatcctctgaagcaactggtagagcagatcaatgacaagttcagt
gatttcttccgctccatgcagtgtgccggggaggtggacctgcattcagagaacgaggag
gagtatgataaatacgggatccgtatccgggtgaagttccgtagcagcacgcagctccac
gagctcacagcacaccaccagagtggaggggagcgcagtgtctccacaatgctctacctc
atggccctgcaagagctcaaccgctgtcccttccgagtggtggatgagatcaaccagggt
atggacccagtcaatgaaaggagagtctttgacattgttgtacggacagcctgcaaggag
acaacctcccagtacttcttcatcacacccaagctccttcagaacctccagtatgcagat
gagatgactgtcctgtgtgtccataacggacctcacatgctgccccccaacaagtgggac
gagaaggccttcacgagacgctgcctccgccgcaagggcaaatag
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