Oncorhynchus nerka (sockeye salmon): 115122630
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Entry
115122630 CDS
T07952
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
one03009
]
115122630 (ighmbp2)
03012 Translation factors [BR:
one03012
]
115122630 (ighmbp2)
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115122630 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
115122630 (ighmbp2)
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
Other ribosome biogenesis factors
115122630 (ighmbp2)
Translation factors [BR:
one03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115122630 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
Viral_helicase1
UvrD-helicase
DEAD
nSTAND3
AAA_16
AAA_22
ResIII
SLFN-g3_helicase
Helicase_RecD
PIF1
AAA_25
IstB_IS21
T2SSE
ABC_tran
HEM4
AAA_31
AAA
AAA_18
PhoH
NPHP3_N
MeaB
DnaB_C
UvrD_C_2
ATPase
ATPase_2
Flavi_DEAD
SRP54
Herpes_ori_bp
NTPase_1
Motif
Other DBs
NCBI-GeneID:
115122630
NCBI-ProteinID:
XP_029507710
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MEVECFVSKTLELLQEEREAEIEETKLWQENVSLKDLQSKGVCLLKLQIGSQSTGLYGRS
LLLLEPRKHMGVSVLPSNNFGPGDIVGLYDLDGCKPSSQVCTGVVTRISQSAVTVACEDS
PDGLNLDTDALYNLMKLANDVTYKRMKKALNTLNGYSSGPAADLISVLFGYSEPGSISQP
NDLSFLNSGLDESQRQAVSFALSQREVAVIHGPPGTGKTTTVVEIILQVVKRGQKVLCCA
GSNVAVDNLVERLAKAKAKVLRLGHPARLLESIQKHSLDAVLAHSDNTNIIADIREDIDK
AFMGMKKMNDKRDRIHLKREVGELRKELRTREATAIAEVLKRADVVLATNTGANDGGPLK
NLPVDHFDWVVIDECAQALESSCWIALLRGRKCILAGDYKQLPPTIKSHTAASKGLSVSL
MERLILKYGDSVVRMLTVQYRMNSNIMTWASEQMYQGQLVAHSSVEKHLLKDLPGVTSVE
ETSTPLLLIDTAGCGLSEMEVTDDQSKGNQGEVDIVELHIKALTEAGVKPKDIAVIAPYN
LQVDLLRQRLSARHPDLEIKSVDGFQGREKEAVVLTLVRSNRKGEIGFLAEDRRINVAVT
RARRHLALVCDTQTVQTHGFLKTLIDHMTQHGDVRTAFEYLQDIVPQNYTRDHRDTKSNN
TKAAASCSTSNKQKGRGQAGSKVEPGHKRTSGGNKTQGGEPQTGSDPGTHSQGRRSTPTE
EEQRLTQIKYLEIKNQVEWFLQDPDQTELRFPSTLNSHDRLLVHQVAEELGLNHESQGEG
KDRCITVSRLPTGSNEAGEEEEQQAQEPAAVREEESVTGPPVGQPAAVREEESVTGPPVE
QPAADLKTLHLERMRREQKKREQKMEQEKHLDTIRTAGQTQTAKKAKAKGKPKKTKAGAC
EIAAAAAAGDDFDTLIDAVVKAERVCSFVKCKTLVIYLGQLCLFCNRQYCLGHHIPEVHG
CGDQARANARMRISKEGVLYAGSGHKDKSVDPNKKAYLHRKLDSKLKDMEKQRKTKPKES
DNN
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggaatgctttgtgtccaagaccctagagctccttcaggaggagagagaagca
gagatcgaggagacaaagctatggcaggagaatgtctctctgaaagatctccagagtaaa
ggcgtttgtctcctgaagctgcagataggaagccagtcaactggcctttatggacgatca
ctcctccttctggaacccagaaaacacatgggcgtctctgtgctgcctagcaacaacttt
ggacccggagacatagtgggtctgtatgacctggatggctgtaagccgtcctcccaggtg
tgtaccggtgtcgtgacccgcatcagtcagtcagctgtcaccgtggcctgtgaggactcg
ccggacggactcaacctggacacagacgctctgtacaacctcatgaagctggctaacgat
gtcacgtacaagcgcatgaaaaaggccttgaacaccttgaatgggtacagcagtggacca
gccgcggatttgatcagcgttctctttggctattcagaacctggctctatatcacaacca
aatgatctgtctttcctgaacagtggtctggatgagtctcagagacaggcggtgtcgttt
gctctgtctcagagagaggtagctgtgatacacgggccaccaggcaccggcaagacaacc
actgtggtggaaatcatcctacaagtggtcaaacggggacagaaggtcctgtgctgtgcc
ggttctaatgtggccgtggataacctggttgagcgcctggctaaggccaaagctaaggtc
ctgagactgggccaccctgcccgcctgctagagtccattcagaaacactcgctagacgcc
gtcctcgctcacagtgacaacaccaacatcatcgctgacatacgcgaagacatcgacaaa
gcttttatggggatgaagaagatgaatgacaaacgagatcggatccacctgaagagggag
gtaggagagctgaggaaggagctgaggaccagggaagctacagccattgctgaggtcctc
aaacgtgctgatgttgttctagccactaacacaggtgctaatgatggtggccctctgaag
aacctacctgtagaccattttgactgggtggtgatcgatgagtgtgcccaggcgttggag
agctcctgctggatcgcgctgctccgaggcaggaagtgtatcctggctggagattacaag
cagctgccacccaccatcaagtctcacacggctgcatctaaaggcctgtctgtcagcctg
atggagaggttgatcctgaagtatggcgactccgtagtcaggatgctgacagtgcagtac
cgtatgaacagtaacatcatgacctgggcctcagaacagatgtaccagggtcaactcgtc
gcacacagctcagtggagaaacacctgctcaaagatctcccaggagtaaccagtgttgaa
gagaccagcacccctctcctcctcatagacacagcaggctgtggacttagtgagatggag
gtgacagacgaccagtccaaaggaaaccaaggtgaggtggacattgtggaactgcacatc
aaagcgttgactgaagctggggtgaaacctaaagacatcgctgttatcgccccttacaat
ctgcaggtggatctcctgcgtcagcgtctctcagcgagacatcctgatctggagatcaag
tctgtagacggcttccagggtagagagaaggaggctgtggtgctgaccttggtcagatct
aacaggaaaggtgagatagggttcttggctgaagaccggaggatcaacgtggcggtgact
cgagccagacgtcacctggccctggtgtgtgacacgcagaccgtccagacccacggcttc
ctcaagaccctcatcgatcacatgacccagcacggcgacgtacgcaccgcctttgagtac
ctgcaggacattgtgccccagaactacaccagagaccaccgagataccaagtctaacaac
actaaagctgccgctagctgctccacctccaacaagcagaagggcagaggccaggctggg
agcaaggtggagccaggacacaagaggacctctggggggaacaagacccagggaggagag
ccccagacaggttcagatcccggcacacacagccaaggcagacgttccacccccacagag
gaagagcagagactgacgcagataaaatacctggagatcaagaaccaggtggagtggttt
ctccaggacccagaccagacggagctacggtttccctcgaccctcaactcccacgaccgc
ctgctcgtacaccaggttgcagaggagctgggcctgaaccatgagagccagggagaggga
aaggatagatgcatcactgtctccagactcccaacagggtctaacgaggctggggaagaa
gaggagcaacaagcccaagaaccagcagccgtccgggaggaagagagtgttacagggcct
cctgtagggcaaccggcagccgtccgggaggaagagagtgttacagggcctcctgtagag
caaccggcagcagatctcaagactttacatctggaacgaatgagacgggagcagaagaag
agagagcagaagatggagcaggagaagcatctagataccatccgtacagcaggacagact
cagactgctaagaaggccaaggcaaaaggaaagcccaaaaagaccaaagcgggggcctgt
gagatcgctgcggctgcggcggcgggtgatgattttgacaccctaatagatgctgtggtg
aaggcagaacgcgtctgtagttttgtcaagtgtaaaacgttagtaatttatctgggacaa
ctctgtctgttctgcaacagacaatactgcctcggtcaccacatacctgaggtccatggg
tgtggagatcaagccagggccaatgccagaatgaggatcagtaaagaaggggttctgtat
gctggtagtggacacaaggacaagtctgtagatcctaacaagaaggcctatctacacagg
aagctggactccaaactcaaagacatggaaaagcagcggaagaccaaacccaaagagagt
gacaataattga
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integrated database retrieval system
