Oncorhynchus nerka (sockeye salmon): 115122742
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Entry
115122742 CDS
T07952
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115122742
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
115122742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
Ank_KRIT1
DUF3447
PKD_channel
DBB
DUF4600
Motif
Other DBs
NCBI-GeneID:
115122742
NCBI-ProteinID:
XP_029507849
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
LSHGARLSSQNKLGHYAIHAAAFAGSKKAMDVILKAGEEMGHSIEEHINFLDKSYSSPLH
LAVRGGNMDIIEFCIHKGAKIDQQQVDRSTALHFACSQGATEAVKLMLSSYSRLDSIINL
PDGACQTPLHRATIFDHTELAEYLISKGADIDYIDSKGLSPLLLATNCGAWRTVALLLSK
GANVKIKDQSGCNFLHLAILQPKGLKNLSGDVLQHSSVKDLLSNEDNEGCTPLHYACRLG
IHESVKNILVLQVSLDRKSKDKKSALHFAAQYGRVNTCQRLLETITDSRLLNEGDERGLT
PLHLASGGGHTKVVELLLRKGALFHCDYKGRSCLHHAASEGYTQTMKIVLATNIKLLDKL
DEDGSTALHLAAREGHVAAVRLLLQRGAEISLNRNHASFFHEALQHGKKDVINAIIDSDR
CTHILSMFKRDAGHRCPVLDLVDLLPESCKYLLDRCIRESDDDTRSPDYHIDYNFQWLQA
PIALTKHAKVDKGLKIQPLASLNAMVKYNRIELLSHPVCKKYLEMKWVAYGSAAHLLNLF
VYLLGLLPLTHLIVSLRPSLDYTGPDNTTAVTTVPISFREQGSFLSSCMVMVLVMNIYSM
GKEVTQMYHQRLTYFKDPFNYQDWTVAISSLLFVIPLNFNVEGSWYWQAGAMAVFQSWIS
FLFYLQRFEHFGIYVVMFNEIAKTLWKILLLFFFLMLAFALVFHALMLNQKEFERLDLSG
VQIFVMMVGELNYQSNILDIYLDNKLPFPFLTFYMFVVFVILMPILLMNMMIGLAVGDIA
EVKRTAGLKRIAMQIELHTNLEEKMPYWLLKRVDQSFFTIYPNRKCSKASILNFWSQGEA
NEVQTRLMTNSSNSTSVEAELRRQKYRLKEISSVLEKQHDLMKLMIQKMEITSEADEHDG
PTEVKGYRQRSNWGKAKGSNWIPLMKVLERKNV
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
ctgagccatggggcgcggctctccagtcagaacaaactgggccactatgctatccatgca
gctgccttcgcaggctcaaagaaagccatggatgtcatcctcaaggctggagaggagatg
ggtcattccatagaggaacacattaatttcctggataagtcatacagtagtccacttcac
ctggcggtcaggggagggaacatggacatcatcgagttctgcatccacaaaggagccaag
atcgaccaacaacaggtggaccggtccacagctctacattttgcctgttcccagggagct
acagaggcagttaaactgatgctgtcctcctacagtagactggacagcatcattaacctg
cctgatggagcctgccagacacctctacacagggcaactatatttgatcacacagaattg
gcggagtacctcatttcgaagggtgcagacattgactacatagacagtaagggtctttct
cccctgctgctggctactaactgtggagcctggagaactgtggctcttctgctgtccaaa
ggtgccaacgtgaaaataaaggaccaatcagggtgtaacttcctccacctggccatcctg
caacccaaaggcctcaaaaacctctccggggacgtcttgcagcacagcagtgtgaaggat
ctgttgagtaacgaggacaacgagggctgtactcctctccactacgcctgcagactgggc
atccacgaatctgtcaagaacatcctggttctacaggtctctctggaccgcaagtccaag
gacaagaagtctgccctgcacttcgctgcccagtatggtcgtgtcaacacctgccagcgt
ctgttggagaccatcacagactcccgtctgctgaacgagggggacgagagaggcctgacc
cccctacacctggcctctggagggggacacaccaaggtggtggagctgctgcttcgtaaa
ggagccctctttcactgtgattacaaagggaggagctgtttacaccatgcagcgtcagag
gggtacacccagaccatgaagatcgtcctggccaccaacatcaaactactggacaagctg
gatgaggatgggagcactgcgctgcacttggcagcccgggagggccacgtagcagcggtg
agactgctgctccagagaggggcggagatcagcctcaacaggaaccacgcctccttcttc
cacgaagcactacaacatgggaagaaggacgtgattaacgccatcatcgacagtgacaga
tgtactcacatcctgagtatgttcaaacgtgatgctggccatcgttgtccagtgttggac
ctggttgacttgctgccagagtcttgcaagtaccttctggatcgctgcattagagaatca
gacgacgataccagaagtcctgactaccatatcgactacaatttccagtggcttcaggct
ccaatagcactgacgaagcatgcaaaggtagacaaaggcctgaagatccagcctctggcc
tctctgaatgccatggtgaaatacaaccgcatagagctcctctcacaccctgtctgcaag
aaatacctggagatgaagtgggtggcctacgggagcgccgcacaccttctgaacctgttc
gtgtacctgctgggtctgcttcctctcacccacctcatagtgagcctgagacccagcctg
gactacaccggccctgacaacaccacagctgtcaccacggtgcccatttccttcagagag
caaggttccttcctgtccagctgcatggtgatggtgctggtgatgaacatttattccatg
gggaaggaagtgacgcagatgtaccaccagcgtttgacttacttcaaggatccctttaac
tatcaggactggaccgtggccatctcctctcttctcttcgtcatccccctgaatttcaac
gttgaggggtcttggtactggcaggctggggcgatggcagtctttcaatcctggattagc
ttcctcttctatctgcaaaggtttgagcactttgggatttacgtggtgatgtttaacgag
attgcgaagacattgtggaaaatcctactgcttttcttctttctgatgctggcgtttgcc
ttggtcttccatgccctcatgctcaatcagaaagagtttgagcgactggacctgtctggg
gtccagatctttgtgatgatggttggagaactgaattaccaaagcaacattctggacata
tacctagacaacaaacttccatttcccttcctcactttctatatgtttgtggtgtttgtc
atcctcatgccgatcctgctgatgaacatgatgatcggtttggcagtcggagacatcgct
gaggtaaagagaaccgcaggtctgaagagaatagccatgcagatcgagctccacaccaat
ctggaggaaaagatgccgtactggttgttgaagagagtggaccagtcattcttcaccatc
taccccaaccgcaagtgctccaaggcctcaatacttaatttctggagtcaaggagaagca
aacgaagtgcagactcgtctaatgaccaactcatcaaattcaacctctgtcgaggctgaa
ctacgcagacagaagtacagactgaaggagatatccagtgtgctggagaagcagcacgac
ctgatgaagctgatgatccagaagatggagatcacctcggaggcagacgaacatgacggg
cccacagaggtcaaaggttacaggcagaggtcaaactggggcaaagccaagggctccaac
tggatcccgctgatgaaggtcctcgagcgcaagaacgtttga
DBGET
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