Oncorhynchus nerka (sockeye salmon): 115123415
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Entry
115123415 CDS
T07952
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1-like isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04020
Calcium signaling pathway
one04080
Neuroactive ligand-receptor interaction
one04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
115123415
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
115123415
04082 Neuroactive ligand signaling
115123415
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115123415
Ion channels [BR:
one04040
]
Ligand-gated channels
Glutamate (ionotropic)
115123415
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
115123415
NCBI-ProteinID:
XP_029508620
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All DBs
Position
LG4:complement(21806376..21837439)
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AA seq
968 aa
AA seq
DB search
MRLFLLAVFLSCSCARGGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQIYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQETNLTALLLEAKELEARVIILSA
SEEDAAAVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKSRLIQVGIYNGTQVVMNNQRKIIWPGGETEKPRGFQMSTRLKIVT
IHQEPFVYVKPTEQDGTCKEEKTLNGVADIKKVICTGPNETIPGRPIVPQCCYGFCIDLL
IKLAGTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNER
AQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRF
SPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMII
VASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMY
RHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMR
KDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGG
IAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDSKEASRSQAVGASMTPSLP
SSSLETQDDRKSGRAEPPDPKKKASFRSISTSLASSIKRRRSSKDTQYPPTDITGQLNLS
DPSVSTVV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttctgctggcggtgttcctctcgtgctcttgcgcgcggggcggctgcgaa
ccgaagatagtgaacatcggagcagtcctgagtcagaagaggtacgagcaagtctttaag
gatgcggtgacccaggcgaatcagatctacgggagagataaattcaagttgaccgccatc
tccgtaacgcacaaacccaacgctatccagatggctctctccgtctgcgaggacctcatc
tctaaccaggtgtatgccatcctggtgagtcatcctccccagtccaatgaccacctcacc
cccacgcctgtgtcatacaccgcaggcttctaccgcatccctgtggtgggcctcaccacg
cgcatgtccatctactccgacaagagtatccacttgtcctttctgcggactgtccccccg
tactcccaccaggctcacgtgtggttcgacatgatgcgagagtttcgatggaaccacatc
atcctgattgtcagcgatgaccacgaggggcgggccgcgcagaagagactggagacccta
ctggaggagagggaaacaaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacctaaggcagagaaagtcctccagttcagccaggagactaac
ttaactgctctgcttctggaggccaaagagctggaggctcgtgtcatcatcctctccgcc
agtgaagaggacgctgctgcagtttacaaggctgcccgtttcctcaacatgacgggctcg
ggttacgtgtggctggtgggagagcgggagatgtcgggtaaagccctgagtgaggcacca
gatggtctcatcggcctccagctcatcaacggcaagaacgagtcggcccatatcaacgac
gcagtggcagtggtggctcagtccatccaggagctctttgagaaggagaacatcacggag
ccgcccagaggctgtgtgggaaacaccaacatctggaagaccgggcccctcttcaaaagg
gttctgatgtcatcaaagtacccagagggcctcactggacgtgtggagttcaatgacgat
ggcgacaggaagtacgctcactacagcattctcaactaccagaagagtcgactcattcaa
gtcgggatttacaatggaactcaggtggtgatgaataatcagaggaagatcatctggccg
ggaggagagacagagaaaccgcggggctttcagatgtccacaagactaaagatagtgacc
atacaccaggagccctttgtgtatgtgaaacccactgagcaggatggaacctgcaaggag
gaaaaaaccttaaatggagtggcagatattaaaaaggtgatctgcactggaccaaatgag
accatcccaggacgtccaattgtacctcaatgttgttatggattctgtatcgatctactt
atcaagttggccggaaccatgaactttacctatgaggtgcacctggtggctgatgggaaa
tttggaacacaggagcgggtgaacaacagcaacaagaaagagtggaatggcatgatggga
gagctcctggggggtctggcagatatgattgttgccccgctgacgataaacaacgaacga
gcccagtacatcgaattctccaaaccttttaagtaccaaggcctaaccatcctcgttaaa
aaggaaatccctcgcagtacactggactcgttcatgcagccttttcagagcacactgtgg
ctgctggtgggtctttcggtgcatgtggtggcggtgatgctttacctactagaccggttc
agcccgtttgggaggtttaaagtaaacagtgaagaagaagaagaagacgccctcaccttg
tcgtcagccatgtggttctcctggggagtgttgcttaactccggtattggggaaggcgcg
ccgcgcagcttctcagcgagaatcttgggcatggtgtgggccggctttgccatgatcata
gtggcatcgtatactgccaacctggctgccttcctggtgctggaccggcctgaggagcgc
atcaccggcatcaacgacccgaggctgaggaacccatcagacaagttcatctacgccact
gtgaagcagagctctgtggacatctacttccggcggcaggtggagcttagcaccatgtac
cgccacatggagaagcacaactacgagagtgccgctgaggctatccaggccgtgcgcgac
aacaagctgcatgctttcatctgggactctgcggtgctggagtttgaagcctcgcagaag
tgcgacctggtgaccacgggagagctgtttttccgttcgggctttggcataggcatgcgc
aaggacagcccctggaaacagaatgtgtccctggccattctcagttcccatgagaatgga
ttcatggaagatctagataaaacctgggtgagataccaggagtgtgactcacggagcaat
gccccagccacactcacctttgagaacatggcaggagtgttcatgttggtggctggaggc
atagcagcagggatcttcctcatctttattgagatcgcctacaagcgacacaaagacgcc
cgaaggaagcagatgcagctggcctttgcggccgtcaacgtctggaggaagaacctgcag
gacagtaaggaggcctctaggagccaagctgtgggcgcatcgatgactccatcgttaccc
tcttcctctctagagactcaggatgataggaaaagtggtagagcagagccccccgacccc
aaaaagaaagcctcttttaggtccatcagtacctccctggcctccagcatcaagagacgt
aggtcgtccaaagacacgcagtacccacccaccgacatcacgggccagctcaacttgtcc
gacccatctgtcagcacagtggtgtga
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