Oncorhynchus nerka (sockeye salmon): 115123632
Help
Entry
115123632 CDS
T07952
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
one01002
]
115123632
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115123632
Enzymes [BR:
one01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
115123632
Peptidases and inhibitors [BR:
one01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
115123632
Ubiquitin system [BR:
one04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
115123632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
Motif
Other DBs
NCBI-GeneID:
115123632
NCBI-ProteinID:
XP_029508844
LinkDB
All DBs
Position
Unknown
AA seq
2594 aa
AA seq
DB search
MTVTTRGSPVGGNDSQGQAPADSPSQPPPTQAQTVSPNPSTTEPSPVSPPAAEEEQGQGD
SVPALEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLCKKGLDVKCEA
CQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIITNTHRLVELCVTKLPQDWFPLLELLA
TATNPHCKFHIYNGTRPSETIPAGATLADDELFARPPDPRSPKGWLVDLINKFGTLNGFQ
TLHDRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELK
KEAKNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNAL
NEVNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEK
ILRFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKDK
SWTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIK
ILDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSP
HVFYRHDLINQLQHNHALVTLVAENLSAYMETMRPFSKAEHADFDPQTVRVGSRYSHVQE
VQERLNFLRFLLKDGQLWLCAPQAKQIWRCLAESAVFLCDREACFKWYSKLMGDEPDLDP
DINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDY
LWRVVIQGTDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQLCFDRLKASYDTLCVL
DGDKDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERSILPMSRAFRGKHITLIVRFP
NQGRQVDDLDIWSHTNDTIGSVRRGILTRIKANATHTKIELFIGGEVVDPADDRKLIGQL
NLKDKALITAKLTQVSATVPSSPDSSSDSSTGSPSNHGNHFSEGPNPEVEGCLPGVIMSL
HLRYISFLWQVADLGCTLNMPLLRDGARLLMKLMPPDNGTMENLRAICLDHAKLGENSLS
PTLDSRFFGPSPSQVLYLTEVVYALLMPASGTLGEDASDFQYNFLKSGGLPLVLSMLTRN
NFLPSADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPVVEGTSPASPINQATHD
QALVLQSALQNIPNPASECMLRNVAIRLAQQISDESLPPKNAQNFFQASKYIPDLCVIRA
VQKIVWASGCGTVQLVFSSNEEISQIYEKTNAGKEPDGEDEMVCCEALEIMTLCFALLPT
ALDTLSKEKAWQTYIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVL
GSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEALLNNEIDWLKKIRDEVKRTGETG
VEETILEGHLGVTKELLAFQTPEKKYYIGCEKGGANLIKELIDDFIFPASNVYLQYVKSG
EFPTEQAIPVCSSPASINAGFELLVALPVGCVRNLKQIVDTLTDMYYLGCEALTEWEYLP
PVGPRPTKGFVGLKNAGATCYMNSVIQQLYMIPPIRNGVLAVEGTGTDVDDELSGDEKQE
NETNADGTARDEVFAYQHQFDDKPSLSKSEDRKEYNIGVLRHLQVIFGHLASSRLQYYVP
RGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKAMGHSSMLSKVLGGSFADQKIC
RDCPHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRL
LIKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDGNPES
QMIMQNEPSEPDPPGCSSKYSLVGVLVHSGQASGGHYYSYISQRDSGTGGSADSGQKARW
YKFDDGDVTECKMDDDEEMKSQCFGGEYMGEVFDHMMKKMSYRRQKRWWNAYILFYERMD
AAGGGAAVEADGELARCISELTVSPTTPRQVTMPGAIECSVRKQNVQFMHSRMQYSLEYF
QFVKKLLTCNSVYLNPPPGQDHLLPEAEEIAMISIQLAARFLFSTGFHTKKVVRGPAGDW
YDALCILLRHSKNVRCWFAHNVLFAYPTRFSEYLLECPSAEVRGAFAKLIVFIAHFSLAD
GPCPAPASSPDGSTQGCDNLSLSDHLLRAVLNLLRREVSEHGRHLQQFFNLFVMYANLGL
AEKTQLLKLSVPATFMLVALDEGPGPPIKYQYAELTKLYAVVSQLLRCCDVSTRMQSSIN
GNPSLANPYGDTNLTTPIMPLQQLVSEILFVRTSYVKKIIEDCSNSEETVKLLRFSCWEN
PQFSSTVLSELLWQVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPDDRDGLF
DTIQRSKNHYQKRAYQCIKCMVALFSNCTVAYQILQSNGDLKRKWTWAVEWLGDELERRP
YTGNPQYTYNNWSPPVQSNETSNGYFLERSHSARMTLAKACELCPEEEPDDQEATEDHDS
SPPEDTALYPHNPAPATQFQQQNNHPHAQPYTGPAAQHMNTPQRPPQRAQESWESTTEEA
GPVAPPPAVQTTKE
NT seq
7785 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcaccacccgtggctcccccgtggggggcaatgatagccagggccaggcaccc
gctgattctccgagccagcccccacccacacaggcccagacggtgtccccaaacccgtcg
accacggagccgtctcctgtgagcccaccggcggcggaggaggagcagggtcaaggagac
tctgtccctgctctggaggaggaggagcctgccttccctcacactgacctggccaagctg
gacgatatgatcaacaggccccgatgggtagtcccagtcctgccaaagggggaattagaa
gttctacttgaagctgctatagacttatgtaaaaaagggcttgatgtgaagtgtgaggcg
tgccagaggtttttcagggacggcctgaccatctccttcactaagatcctcacagacgag
gctgtcagcgggtggaagtttgagatccataggtgtatcatcaccaacacacaccggctg
gtggagctgtgtgtgaccaagcttcctcaggactggttccccttactggagctactggcc
acagccaccaacccccactgcaagttccacatctacaacggcacgcggccctctgagacc
atccccgccggggccacgctggccgacgacgagctcttcgcccgcccacccgaccctcgc
tcacccaagggctggttggtggacctgattaataagtttggcacgctgaacgggtttcag
actctacacgaccgcttcatgagcggacaggcactcaacgtacagatcatcgctgccctc
atcaagccgttcggccagtgctatgagttcctgaccttgcacacagtgaagaagtacttc
ctgccagtgatcgagatggttcctcagttcctggagaacctgacggacgaggagctgaag
aaggaggccaagaacgaggccaagaacgatgccctgtccatgatcatcaagtccctgaag
aacctggcctccagggtgcccggtcaggaggagaccgtcaagaacttggagatatttagg
ttgaaaatgatccttaggttattgcagatttcctcgttcaacggcaagatgaacgctctg
aatgaggtcaacaaggtcatttccagcgtgtcctactatacgcatcggcatggcaacccc
gaggaggaggagtggctgacggcagaacgcatggcggagtggatccagcagaaccacatc
ctgtccatcgtgctgagggacagcctccaccagcctcagtacgtagagaaactagagaag
atactccgcttcgtcatcaaggagaaagccctcaccatgcaggacctggacaacatctgg
gcagcacaggctggtaagcacgaagccatagtgaagaatgtccatgatcttctggccaaa
ctggcctgggacttctctccagagcagctcgaccatctctttgattgcttcaaggataag
agttggacgaatgcgagtaagaagcagcgtgagaagctgctggagctgatccgtcgtctg
gcggaggacgataaggatggagtgatggcccacaaggtgctcaacctgctgtggaacctg
gctcacagtgacgacgtccccgtggacatcatggaccaggccctcagcgcacacatcaag
atactggactacagctgctctcaggacagagacacccagaagatccagtggatagaccgc
ttcatcgaggagctgcgcaccaacgacaagtgggtcataccagccctgaagcagatcaga
gagatctgcagcctgtttggggaagctcctcagaacctcagtcagacccagaggagtcct
catgtgttctatcgtcatgacctgatcaaccagctgcagcacaaccatgccctggtcact
ctggtggctgagaacctgtctgcctacatggagaccatgagaccgttctccaaagctgaa
catgcagactttgaccctcagacggtcagagtgggaagtcgctacagtcatgttcaggag
gtccaggagaggctcaacttcctgaggttcctgttgaaggacggacagttgtggctatgt
gctcctcaggccaagcagatctggaggtgtctggctgagagcgctgtcttcctgtgtgac
cgggaggcgtgcttcaaatggtactctaagctaatgggagatgagccagacctggacccg
gacatcaacaaggacttctttgagaacaatgttctgcagctggacccgtccctgctcacg
gagaacggcatgaagtgcttcgagaggttcttcaaggctgtcaactgccgcgagggcaaa
ctggtggccaaacgcagggcctacatgatggatgacctggagctcataggactggactac
ctctggcgggtggtgatccagggtactgatgacatcgccagccgagccatcgacctgctg
aaggagatctacactaacctggggcccaagctgcaggtcaaccaggtggagatccacgag
gacttcatccagttgtgttttgaccgtctgaaggcgtcgtacgacacgctgtgtgtcctg
gacggggacaaggacagcatcaactgtgcccggcaggaggccatccgcatggttcgcgtg
ctcaccgtgctcaaggagtacatcaacgagtgtgacagcgactaccacgaggagaggtcc
atactgcccatgtccagggcgttccgggggaagcacatcacattgatcgtgcgtttccct
aaccagggtcgtcaggtggatgacctggacatctggtctcacaccaatgacaccatcggc
tcggtgcgccgcggcatcctcacacgcatcaaggccaacgccacgcacaccaagatagag
ctcttcattggcggggaggttgtcgacccagcggatgacaggaagctgattggacagctc
aacctcaaggacaaagcattgatcacagccaagctgacccaggtgagcgccaccgtgccc
tccagtcctgacagctcctcggactcctccaccggctcacccagtaaccatggcaaccac
ttcagcgaagggcccaacccagaggtggagggctgcctgcctggagtgatcatgtctctc
cacctgcgctacatctcgttcctgtggcaggtagcagacctgggttgtaccctcaacatg
cctctgctgcgagatggagccaggctcctcatgaagcttatgcctccagacaacggtacc
atggagaacctgcgcgctatctgtctggatcatgccaagctgggagagaacagcctgagc
cccacactggactcccgcttctttggcccctcgccctcacaagtcctctacctcactgag
gtggtgtatgcattgctgatgccggccagcggcaccctcggcgaggacgccagcgacttc
cagtacaacttcctgaagagcggcggcctcccactcgtactgagtatgctcaccaggaac
aacttcctgccgtcggccgacatggagacgcggcggggggcgtacctcaatgccctgaag
atcgccaagctgctgcttaccgccgtggggttcggacacgtcaaagctgtggccgaggcc
tgccagcccgtagtggaggggaccagccctgcatcgccgatcaaccaggcgacccacgac
caggccctggtcctccagagtgctctacagaatatcccgaaccccgcctcggagtgcatg
ctccgcaacgtggccatacgactggcccaacagatctctgacgagtctctgcccccgaag
aacgcccagaacttcttccaagcatccaagtacatcccagacctctgtgtgatccgggcg
gtgcagaagatcgtgtgggcttcaggctgtggcacggtacagctggtcttcagctctaat
gaagagatcagtcagatctatgagaagacgaacgcgggtaaggagccggacggggaggat
gagatggtgtgctgtgaggcactggagatcatgaccctgtgttttgccttgctgcccacc
gctctggacactctcagtaaggagaaggcctggcagacttacatcatagacctgctactg
cactgccacagcaagtcagttcgtcagatggctcaggaacagttcttcctcatggccact
aggtgctgtatgggacacagacccctcctcttcttcatcaccctcctcttcaccgtctta
gggagcacggcaaaggagagggcgaagcacgcaggggactactttacgctgctgaggcac
ctgctgaactacgcctacaacagcaacatcaacctgcctaacgctgaggcgctgctcaac
aatgagatcgactggctcaagaagatcagggatgaggtgaagcggacaggagagacgggg
gtggaggagactattctagaaggtcacctgggggtcaccaaggagctgctggccttccag
acaccagagaagaagtactacattggctgtgagaagggtggggccaacctcataaaggag
ttgatagatgacttcatcttcccggcgtctaacgtgtacctgcagtacgtgaagagtggg
gagttcccaacggagcaggccatccctgtctgtagcagccccgcctccatcaacgccggc
ttcgagttgctggtggctctgccggtcggctgtgtccggaacctcaagcagatcgttgat
acactcacagatatgtactacctaggttgtgaggctctgacagagtgggaatacctcccc
ccagtggggccgcggcctaccaaaggctttgtggggctgaagaacgcgggggccacctgc
tacatgaactctgtcatccagcagctctacatgatcccgcccatccgtaacggtgtcctg
gccgtggagggcaccggcaccgacgtggacgatgaactgtccggggacgagaagcaggag
aacgagactaatgccgacggaacggcgcgggacgaggtgttcgcctaccaacaccagttt
gacgacaagccctcgctgagtaagtcggaggacaggaaggagtacaacattggggtgcta
cgccacctacaggtcatctttggtcacctggcctcctcccgactgcagtactacgtaccc
cgaggcttctggaaacagttcaggttatggggtgagccggtgaatctgcgagagcagcac
gatgccctggagttcttcaactctttagtggacagtctggatgaggctctgaaggccatg
ggccactcctccatgctcagcaaggtgcttggaggttcctttgccgaccagaaaatctgc
cgtgactgcccacacaggtatgagtgtgaggagtccttcaccacgttgaacgtggacatc
aggaaccaccagaacctgctggactctatggagcagtacgtcaaaggagacttgctggag
ggagccaacgcataccactgtgagaagtgtaacaagaaggtggacacagtgaagcgtctg
ctgatcaagaagcttcctccagtgctggccatccagctgaaaaggtttgactacgactgg
gagagggagtgtgccatcaagttcaacgactactttgagttccccagggagctggacatg
gagccctacactgtggccggggtggcaaaactggagggagatgacggcaacccggagagc
cagatgatcatgcagaacgaaccatcggaacccgacccaccaggctgcagttctaagtac
agcctggtgggggtgctggtgcattcaggccaggccagcggcggccactactactcctat
atcagccagcgagacagtggcaccggcggtagcgccgacagcgggcagaaggcgcgctgg
tacaagtttgacgacggtgacgtgacggagtgcaagatggacgacgacgaggagatgaag
agccagtgcttcgggggggagtacatgggagaggtgtttgaccacatgatgaagaagatg
tcctacaggaggcagaagagatggtggaacgcctacatcctgttctatgagaggatggac
gcggcagggggaggggccgcagtggaggcagacggagagctggccaggtgcatctcagag
ctgactgtgtctcccactacaccacgacaggtgacgatgccgggggccattgaatgcagt
gtgaggaagcagaacgtccagttcatgcacagccgcatgcagtacagcttggagtacttc
cagttcgtcaagaagctgctgacctgcaacagcgtctacctcaaccctcccccgggtcag
gaccacctgctgccagaggcagaggagatagccatgatcagcatccagctagcagctagg
ttcctcttcagcactgggtttcacaccaagaaagtagtccgggggcccgccggtgactgg
tatgacgccctgtgcatcctgctgcgccacagtaagaacgtccgctgctggtttgcccac
aacgttctgtttgcgtaccccacgcgcttctctgagtacctgctggagtgtcccagcgcc
gaggtccggggggccttcgccaaactcatcgtcttcatcgcccacttctccctggcggac
gggccatgccccgcccccgccagctcccctgacgggtccacacagggctgtgataacctg
agtctgagtgatcacctgttgagggcagtgttgaacctgcttaggagagaggtgtcagag
cacggccgacacctgcagcagttcttcaacctcttcgtcatgtacgccaacctgggtctg
gcagagaagacccagttgttgaagctgagcgtccctgctaccttcatgctggtggcttta
gacgaggggcctggccctcccataaagtaccagtatgcagaactgaccaagctctacgct
gtggtctcccagctactgcgctgctgtgacgtctccacacgcatgcagtcatccatcaat
ggcaacccgtccctggccaacccgtatggagacaccaacctgaccacccccatcatgccc
ctgcaacagctggtgtcagagatcctcttcgttaggaccagctatgtgaagaagatcatc
gaggactgcagcaactctgaggagacggtcaagctgctgcgcttcagctgctgggaaaac
ccccagttctcctctaccgtgctgtctgagctgctctggcaggtggcgtactcctacacg
tatgagctgaggccttacctggacctgctgctgcagatactgctgatagaggactcctgg
cagacccacaggatccacaacgtgctgaagggtataccagacgacagggacggcctgttt
gacaccattcagcgctctaagaaccactaccagaaacgggcctaccagtgtatcaagtgc
atggtggctctgttcagcaactgtactgtggcctaccagatactacagagtaacggggac
ctgaagcgtaagtggacgtgggcggtggagtggctgggggacgagctggagaggaggccc
tacacagggaacccccagtacacctacaacaactggtctccccccgtccagagcaacgag
acctccaacgggtacttcctggagcgctcacattccgcacgcatgaccctggccaaggcc
tgtgaactttgccccgaggaggagccagatgatcaggaggcaacagaagatcacgactcc
tcccctcccgaggacacagcgctgtacccccataaccctgctcctgccacgcagtttcag
cagcagaacaaccacccccacgcccagccctatacgggtccggctgcccagcacatgaac
acgccccagcggcccccacagagagcacaggagagctgggagagcaccacagaggaggcg
gggcccgtggcgcccccacccgctgtccagacgacaaaagagtaa
DBGET
integrated database retrieval system
