Oncorhynchus nerka (sockeye salmon): 115123826
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Entry
115123826 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily A member 1-like
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115123826
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
115123826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
115123826
NCBI-ProteinID:
XP_029509050
LinkDB
All DBs
Position
Unknown
AA seq
831 aa
AA seq
DB search
EEMGHSIEEHINVLDKSSSSPLHMAVRGGNVDVIKFCIQKGAKIDQQQVDRSTALHFACS
QGATEAVKLMLSSYSRVDSIINLPDGACHTPLHRSTIFDHAELAEYLISKGADIDYIDCK
GLSPLLLATNCGAWRSVALLLSKGANVNIKDKSGCNFLHLAILQPKGLKNLTGDILQHSS
MMDLLSTEDNEGCTPLHYACRLGIHESVKNILVLQVSLDRKSKDKKSALHFAAQYGRINT
CQRLLETITDSRLLNEGDERGLTPLHLASGGGHAKVVELLLRKGALFHSDYKGWTCLHHA
AAEGYTQTMKIVLGTNIKLLDKLDEDGSTALHVAAREGQVAAVRLLLQRGAEISLNKSHA
SFFHEALQHRRKDVVNAIIDSDRCSDTLRTFKHDAGQRCPVLELVDLLPESCKHLLDCCI
RESKDDDNSPDYHIEYNFQWLQAPIALKKYAKTDESLKVQPLAALNAMVNNNRIELLTHP
VCKKYLEMKWVAYGSXAHLLNLFVYLLGLLPLTHLIVSLRPSGLTGPPDNTQLVTMVRTI
SFREQNSFLSICMVMVLVMNIYSMGKEVMQMYHQRLSYLKDISNIQDWFSIILSLLFVIA
LFFNAEGSWHWQAGALAIIMSWVNFLLYLQRFEHFGIYVVMFREIARTLFKILLLFFFLM
LAFALVFYALMLNQEEFERLDLSVIQIFVMMVGELNYQSNFLDMYLHNKFPFPFITFYML
VIFIIFVPILLMNMMIGLAVGDIAEVQRSATLKRIAMQIELHTNLEEKMPYWLLKRVDQS
SITIYPNRKCSKFWSQGEANEVRTHLLTNSSTSTSVEAKLHKQKQRLKEIS
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
gagaggagatgggtcattccatagaagaacacattaacgtcctggataagtcctccagta
gtcctctgcacatggcggtcaggggaggaaatgtggacgtcattaagttctgcatccaaa
aaggagctaagattgatcagcaacaggtggaccggtccacagctctacattttgcctgtt
cccagggagctacagaggcagttaaactgatgctgtcttcttacagtagagtggacagca
tcattaacctgcctgatggagcctgccacacacctctacacaggtcaaccatattcgatc
acgcggagttggcggagtacctcatttcaaagggtgcagacattgactacatagactgta
agggtctttctcccctgctgctggctactaactgtggagcctggagatctgtggctcttc
tgttgtccaaaggtgccaacgtcaacataaaggacaagtcaggatgtaacttccttcacc
tggccatcctgcagcccaaaggcctaaagaacctcacaggagacatcttacagcacagca
gtatgatggatctgttgagtactgaagacaacgagggctgtactcctctccactacgcct
gcagactgggtatccacgaatcggtcaagaacatcctggttctacaggtctctctggacc
gcaagtccaaggacaagaagtcagccctgcacttcgctgcccagtacggtcgtattaaca
cctgccagcgtctgctggagaccatcacagactcccgcctgctgaacgagggggatgaga
gaggcttgactcccctacacctggcctctggaggtggacacgccaaagtggtggagctgc
tgcttcgtaaaggagctctctttcacagtgattacaaagggtggacttgtttacaccatg
cagcggcagaggggtacacgcagaccatgaagatcgtcctgggcaccaacatcaaactac
tggacaagctggatgaggatgggagcacagcactgcacgtggcagccagggagggacaag
tagctgcagtgagactgctgctgcagagaggggcggagatcagcctcaacaagagccacg
cctccttctttcacgaagcactgcaacacaggaggaaggatgtggtcaatgccatcatcg
acagtgacagatgtagtgacaccctgaggacgttcaaacatgatgctggccaacgttgtc
cagtgttggaactggttgacttgctgccagagtcttgcaagcacctactggactgctgca
tcagagagtcaaaggatgacgacaacagtcctgactatcacattgagtacaatttccagt
ggcttcaggcaccgatagcactaaagaaatacgcaaagactgacgaaagcctgaaggtcc
agcccctcgccgctctgaatgcgatggtgaacaacaaccgcatagagctccttacacacc
ctgtctgcaagaaatacctggagatgaagtgggtggcctacgggagcnatgctcaccttc
tgaacctgtttgtgtacctgctggggctgcttcctctcacccacctcatagtgagcctga
gacccagcggactaaccggccctcctgacaacacacagcttgtcaccatggttcgcacca
tttccttccgagagcaaaactccttcttgtccatttgcatggtgatggtactagtcatga
acatctactccatggggaaggaagtgatgcagatgtaccatcagcgtttgagttacctga
aggacatctctaacattcaggactggttttcaatcatcctctctcttctcttcgtcatcg
ccctgttcttcaacgcggaggggtcctggcactggcaggctggggcactggccataatca
tgtcatgggttaacttccttctatatctccaaaggtttgagcactttgggatctacgtgg
tgatgtttcgggagattgcaaggacgttgtttaaaatcctactgctattcttctttctga
tgctggcctttgccttggtcttctatgccctcatgctcaaccaggaagagtttgagcgac
tggacttgtcagtgatccagatctttgtgatgatggtcggggaactgaattaccaaagca
attttctggacatgtacctacacaacaaatttccatttcccttcatcactttctacatgt
tggttatatttatcatcttcgtgccgatcctgctgatgaacatgatgattggattggctg
tcggtgacatcgctgaggtacagagaagtgccactctgaagagaatagccatgcagattg
aactccacaccaatctggaggagaagatgccatactggttgttgaagagagtggaccagt
catccatcaccatctatcccaaccgcaagtgctccaagttctggagtcaaggagaagcca
acgaagtgcgtactcatctattgaccaactcatcaacttcaacctctgtcgaagccaaac
tacacaaacagaagcaaagactgaaggagatatcca
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