Oncorhynchus nerka (sockeye salmon): 115124009
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Entry
115124009 CDS
T07952
Symbol
depdc5
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
115124009 (depdc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115124009 (depdc5)
Membrane trafficking [BR:
one04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
115124009 (depdc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEPDC5_CTD
IML1
IML1_N
DEP
Motif
Other DBs
NCBI-GeneID:
115124009
NCBI-ProteinID:
XP_029509245
LinkDB
All DBs
Position
LG4:complement(24409046..24441797)
Genome browser
AA seq
1606 aa
AA seq
DB search
MKNKTYKLVVHKKGFGGSDDELVVNPKVFPQVSLGDIIEIAHPTDEYSPLLLQVKSLKED
LQKETISVDQTVAQAFKLRAYQDVVVNIVDPKDVTLDLVELTFKDQYIGRGDMWRLKKSL
VSTCAYVTQKVEFAGIRAQASELWVKGEKVTCGYISEDTRVVFRSTSAMVYIFIQMSCEM
WDFDIYGDLYFEKAVSGFLSDLFAKWKERYCSHEVTVVLFSRTFYNAKTLEEFPEILRGS
IRQDHEGRFYEDFYRVVAQTERRDEWTSLLVTIKKLFIQYPVLVRLKEAVGFPSGHNSTA
AQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQRMIDNG
IGVDLVCMGEQPLHAVPLFKLHNRTVPGDSRLGDDYNLPHWINHSFYTSKSQNSCSCFTP
RIKLAGRKLHAEKFKNNKEHTLGAPKDENSLPIQVDYDAHDAQVFRLPGPSRAQRSTNFR
VVREREVSGRRSWGSADVSGVLGGGVSPPVRSCGPDEQRSLASDDSLGRVSNILLIPRLP
PAQYGEVSSSLGYTSTRELLEKMMESQRDSSAPGRFTVGSAESTLHVRPGGYTPQRALIN
PFAPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQGSEQRDPAHTSAELL
ELAYHEATGRRTASERRQAGENGLYSSGGMEEYIHGSPASSNSTGTPVNRGSSLEDFSSG
SPDPTLLLSAPPTVPSFCCTVGVDWKSLTTPACLPLTTDYFPEWQTLQNDYTEGCYDLLP
HTDLERRDDEAPVMSAPQVFEEFICQRLMQGYQIIVQPNKRKPQPAVAPPLSSSPLYTRG
LVSRRRPEEEESLYWLSMGRTFHKVCLKDKIITVTRYLPKYPYESAQIQYTYSLCPPHSD
AHFLSCWVEFGHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLLLPAGGARRVA
DGEGHWDVYGEGVGTVAGREGMTGTGDWALLDGFIRFLEGLNRIRRRHRSDRIIRKGPAM
KGLQVTGPLSAYPPEPVAPPLGKKGTSALSALLELEQNQKTLEEQQQQGKPSAATSESST
VTMTTTYVDSPRKDAAFILDFIRSPRSSYIYHTQVSTDPAEGGATDKGGQVGAGVVATGG
AAAQATGDTGPSLATETSGQSGTGALCLSSSSTLMEILEAIKHPTTGVQLLPEQKGLPPN
CFISAEIVHWLVNNVEGVATQGMAVDIMQKMLDEGLVTHASGDAMRTFVYGFYFYRIVAE
KDGERGPTSQLPPPVAQGWSTAALEDFALFQRKWFEVAFVLEERRTCDLPAFLLPWLPSR
PASYASRHSSFSRSFGGRSQAAALLAATVPEQKTATLDVDVNNRSDRTEWCSCYYHGNFS
LNAAFEVKLHWMAVTAAVLFEMVQGWHRKAASCGFLLVPVLEVPFALPSYLYGDPLRAQL
FIPLHIHRLLRDGSDNLFEGFEPETYWDRMQLFQEAILYRFGFVQDKFSASAFNFPSENK
PQYIHVTGTVFLQLPYSKRKYSSGQQRRRRNSTASASQGLFGSEELVGYYWAYNTMLTKA
WRTGVLGDEKLADRLLRDFTDFCANKDKRLVNFWDSCQEKMNASAP
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataaaacatacaaacttgtggtgcacaagaaaggctttggaggcagtgatgat
gagcttgtggtgaaccccaaggtgttccctcaagtttcccttggggacataattgagatt
gcacaccccacagatgaatacagccctctcttgctgcaggtgaagagtctcaaagaagac
ctccagaaagagacaatcagtgtggaccagacggtggcgcaagccttcaaactccgggca
taccaggatgtcgttgtaaacattgtggatccaaaggatgtaactctggacctcgtagag
ctcacgttcaaagaccaatacattggaaggggagacatgtggcgactgaagaagagtctg
gtgagtacctgtgcttatgtgacccagaaagtggaatttgcagggatcagagcacaggcc
agtgagttatgggtgaaaggagagaaggtcacttgtggctacatcagtgaagacaccagg
gtggtgttcaggtcgacctctgccatggtgtacatcttcatccagatgagctgcgaaatg
tgggactttgatatctacggggatctctactttgagaaagcagtcagtggttttttgtct
gatctttttgccaaatggaaggagaggtattgcagccatgaagtgacagtggtgcttttc
tcacgtactttctacaacgctaaaaccttggaggagtttcctgagatattgagaggttcc
atcagacaggaccacgagggccgtttctatgaagatttctatagggtagtggctcagact
gagagacgtgatgagtggacctctctactggtcaccatcaagaagctcttcatccagtat
cctgtcttggtgcggctaaaagaagcggttggtttcccctccggccataactctactgct
gctcaggggaattaccttgaggccattaacctgtctttcaacgtctttgacaagcactac
atcaaccgcaactttgaccgcaccggtcagatgtctgtggtcatcaccccgggggtgggc
gtgtttgaagtggaccgactgctcatgatcctaaccaagcagcgcatgattgacaatggt
atcggtgtagacttggtgtgtatgggagagcagccacttcatgcagtgcctctatttaag
ctgcacaacaggacagtgcctggagactcacgactgggtgatgactacaacctgccccac
tggatcaaccacagcttttacacatccaaaagccagaactcctgcagctgcttcactcct
cgcatcaagctggcaggacgcaagctccatgcagaaaaattcaagaacaacaaagagcac
actcttggggctccgaaggacgagaacagccttcccatccaggtggattacgatgcccat
gatgcacaggtgttcagactccccgggccgtcccgagcccagaggagcaccaacttcagg
gtggtccgagagagggaagtgagtggaaggagaagctgggggtctgcggatgtgagtggg
gttctagggggcggtgtgtccccccctgtccgctcttgtgggcctgacgagcagcggagc
ctggcctctgatgacagcctgggcagggtgtccaacatcctgctgatcccccgtctgccc
ccagcccagtacggagaggtcagcagctccctgggctacaccagcaccagagagttgttg
gagaagatgatggaatctcagcgggactccagtgctccagggaggttcacggtggggagt
gctgagtccaccctccatgtgcgcccagggggctacacccctcagagggccctcattaac
ccctttgccccctcacgcatgcccatgaagctcacctccaaccgcaggcgctggatgcac
accttccctgtgggtccgtcaggagaggccatccagatccaccaccagaccagacagaac
atggctgaattgcagggcagcgagcagagagaccccgcccacacctccgccgagctcctg
gaactggcctatcacgaggccactggcagacggacagcctcagagagacgacaggcagga
gaaaatgggctgtactccagcggagggatggaggagtatattcatggcagcccagccagc
agcaacagcactggaacaccggtaaaccgtggctcctcgttggaggacttttcctctggc
agtccggatccaaccctgctgctgtctgcccccccgacagtgcctagcttctgttgcacg
gtgggggtagactggaagtctctgaccacacccgcctgtctgcctctcaccactgactac
ttccctgaatggcagaccctgcagaacgactacactgagggctgctacgacctgctgcca
cacactgacctggagaggcgggatgatgaggccccggtgatgagtgcccctcaggtgttt
gaggagtttatctgtcagcggctgatgcagggctaccagatcattgtccaacctaacaaa
aggaaaccccagcctgctgtggccccgcccctcagcagtagtccactctacaccagaggg
ctggtctctcgacgcaggccagaagaggaggagagtctgtactggctcagtatgggccgt
accttccataaagtctgcctgaaggataaaatcatcactgttacccgctaccttccgaag
tacccgtatgagtcggcccagatccagtacacctacagtctgtgtccccctcactctgac
gcccacttcctgtcctgctgggtggagtttggtcacgagagactggaggagtacaagtgg
aactacctggaccagtacatctgctctgctggctctgaggacttcagtttgatagactct
ctgaagttctggcggacccgcttcctgctgctgccggccgggggggctagacgtgtggcg
gacggggaggggcactgggacgtttacggggagggagtgggcacggtggcgggcagagag
ggcatgacgggcaccggggactgggccctgctggatggcttcatccgcttcctggaggga
ctcaaccgcatccgcagacgccaccgctctgacaggatcatcaggaaaggaccggcgatg
aagggtttgcaggtgactggtcctctctctgcctaccctccggagcctgtagcgccccct
ctgggcaagaaaggcacctccgctttatcagctctcctggagttggagcagaaccaaaag
actctagaggagcagcaacaacaggggaaaccctcagctgccaccagtgagtcttccact
gtcaccatgaccactacatatgtggacagccctcgcaaggatgctgccttcattttggat
tttatacgtagccctcgttcctcctacatctatcacacacaggtttctacagatcctgct
gaaggaggggccacagacaaaggtggtcaggtaggggctggggtggtggcgaccggtggg
gctgcagcccaggcaacaggggatacaggacccagcttagccacagaaaccagtggacag
tctggtactggagccttatgtttgtcctcatcctccaccctgatggaaatactagaggcc
atcaaacaccccacaacaggtgtgcagcttctacctgagcagaagggcctgccccctaac
tgcttcatcagtgctgagatcgtccattggctggtcaacaacgtagagggtgtggccaca
caaggcatggctgtcgacatcatgcagaagatgctggatgagggcctggttacccatgca
tcgggggatgccatgaggacctttgtctatggcttctacttctacaggatagtggcagag
aaagacggtgagcgaggccctacatcccagctgccccctcctgtggcacagggctggtca
acggcagccctggaggactttgccctgtttcagaggaagtggtttgaggtggctttcgtc
ctggaggagcgtcgaacttgtgacctcccggccttccttctgccctggctgcccagccgg
cccgcctcctatgcaagtaggcacagctccttcagccgcagctttggaggacgcagccag
gccgcagcactgctagctgccactgtaccagagcagaagacagccaccttggatgtggac
gttaacaatcgtagcgatcgcaccgagtggtgcagctgctattaccatggcaacttctcc
ctcaacgctgccttcgaggtcaagctgcactggatggccgtcactgcagctgttctcttt
gagatggtccaaggctggcacagaaaggctgcctcctgtgggttcctgttggtgcccgtc
ctggaggtgccctttgccctaccctcctacctatatggtgacccgctgcgggcccagctc
ttcatccctctccacatccaccgtctgctgagggacggcagcgacaacctgtttgagggg
tttgaaccagagacgtattgggatagaatgcagctctttcaggaagccatactataccga
ttcggttttgtccaagacaagttttctgcctctgctttcaacttcccgtcagagaacaaa
ccccaatacatccacgtaacaggcacagtgttcctccagctgccctactccaagaggaag
tactctagcgggcagcagcggaggaggaggaattcaacagcatcagctagtcagggcctg
tttggctcggaagagctggtgggttactactgggcctacaataccatgctgaccaaggct
tggaggacgggtgtgcttggggatgagaagctggctgaccgcctgctcagagacttcact
gacttctgcgccaacaaagacaagaggctggtgaacttttgggacagctgccaggagaaa
atgaacgctagtgctccatga
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integrated database retrieval system
