Oncorhynchus nerka (sockeye salmon): 115124414
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Entry
115124414 CDS
T07952
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115124414
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115124414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
115124414
NCBI-ProteinID:
XP_029509704
LinkDB
All DBs
Position
Unknown
AA seq
1473 aa
AA seq
DB search
MYSSESPQYLRQGLSMFVWTNVEPRSVPVFPWHSLVPFLAPTQSDASTQSGEGQQPINHP
QAASLKTESQGAAVLLQEANEDPPTLERGPTRPTPSTDDLAPEREREAERERPDSETESD
VDDPFFPSVLPEPPLSVTPVKRRTQSLSALPKDGDKISPNKREKDHIRRPMNAFMIFSKR
HRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKD
RKKSSSDGRGLPGPGGKDIRERSMSETTEPHGVELKGVGPGLLGVSERNPGEAHVGQLPR
PRAFSQSAVHSLERSDRGNTQALAELSQMCGDGGGQFSGCAQTLSRSQRGVSEDMTSDEE
RMVICEEEGDDDVIEDPYPASSIDLKCKERVTDSDSDNASGNESDRKRVFAPVICSSFSQ
PTPHGRSVSLSSYPSKRYDEEKGGGLSDRRRKRGIEGGGGDGGGVASLSLSLSSSGHSVI
SSPGGPVPSALAPLGLSPLLGLGAVRVASTVVTNVVRPVVSTPVPIASKPRDGAASSIPH
PPDRRSLPLQQAQLLIGSGAGSGGPGYYSSSSPNPIGAGAGPGGLVNSLVFPGHSQSTVQ
LISPSPNPSSHHQLPPTAPVSAPTHNHTNGPLPLSLPQFLSSSSLASPGGKAITQVQYIL
PTLSASSNHKSPSPQLHNLPNSIFNLPTAPPTHMSISNGKQVGLGSLMGYASSPAVGVVS
PGARVQSQSPVLQGKMLLPMATVRTAPAPAQQFPLVAPPLPVQNGAQAGSKIFQIAPMPV
VQSQLQQGGAGHPGCPFPITMGTATVLHQGSAPSQTVLLPPPPTRITYVQSTPGVPSALP
LVSTTTGSSSPQQAQPTPGSAYVSSPLATLGFTAIAPPGQNLVQPLITGQPPLQAPVQSP
TCPSLPSGPASASGGQIITAIYPPTSVTMATGVVSMATGPPSMVYTVSSSSSLSTHILPK
YTFAPATPTTHTHTHTQLQSDRQTNRHVGERPTDRMSHSQSEKAADRPAETQPELQAYGQ
TDRPTLTQADRQTEREAQTFNKSSSLVAPPSGSSLSLRPCSPPLPSHTSTGSAPGTPKLP
QLPVRTPQKIKATVANIPVGSYEGGGRGKEREKNREREREKERENTGANSRFSFELERPV
ESTSPSQHTHTAEEPPSDRPPEGHDPGDNTDTCSTEASKKESGWKDSVPSSPLPPPLGTD
PALPPPQSDKDAPPPKKVKARPPPLKRTFDSVDKVLSEVYFEERFAQLPEFRPEEVLPSP
TLQSLATSPRAILGSYRRKRKNSTDLDSSTEDPVSPKRRSRRRSSCSSEPSTPKSAAKCE
GDVFTFDRPAPPSVCPPPGTGADGEDILGELEFDKVPYSSLRRTLDQRRALVMQLFQEHG
FFPSAQATAAFQARYSDIFPTKVCLQLKIREVRQKIMQTAVPSETNEASSLPGPSGAQSG
EGTGGGAEPLGEEADREREGSPEEPRDSQESSR
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgtattcatcagaaagccctcaatacctccgtcaaggactgagcatgtttgtctggacc
aatgtggaaccccggtcagttcctgtgtttccctggcattcattggtccctttcctggca
ccaacccaatcagatgcctctactcagtctggtgagggccaacaaccaatcaatcatccc
caagctgccagtctgaaaacagagtctcagggggctgcagtgctgctacaggaggccaat
gaggacccccccaccctggagagaggacccacaaggccaactccctccacagatgacctg
gccccagagagggagagagaggccgaaagagagaggccagacagtgagactgagagtgat
gtggatgacccgttcttccccagtgttcttcctgagccgcccttgtctgtgactcctgtg
aagagacgcactcagtccctcagcgccctgcccaaagatggggacaaaatcagccctaac
aagagggagaaggaccacatcaggcggccgatgaacgcgttcatgatcttcagtaagcgt
catcgagcgctggtgcaccagaggcaccccaaccaggacaaccgcacggttagcaagatc
ctgggcgagtggtggtatgccctggggcccaaagagaagcagaagtatcacgacctcgcc
ttccaggtgaaggaggcccactttaaggcccacccagactggaagtggtgcaacaaagac
aggaagaagtctagttctgatggccgagggctcccggggccggggggcaaagacattaga
gaaaggagtatgtctgagacgaccgagccccatggtgtggagctgaaaggggtggggcct
ggcctgctgggtgtgtctgagcggaatccaggggaggcgcatgtaggtcagctaccccgc
ccccgagccttctcccagagtgccgtgcacagcctggagaggagtgacaggggcaacaca
caggccctggctgaactgtcacagatgtgtggggatggtggtggccagttttcggggtgc
gcccagaccctgtcccggtctcagaggggggtcagtgaggacatgaccagtgatgaggaa
cgcatggtcatctgtgaagaggagggagacgacgatgtcattgaggacccgtaccctgcc
agctccatagacctgaagtgtaaggagagagtgacagacagcgacagtgacaacgcctct
gggaatgagagcgatcgcaagcgtgtctttgctccagtgatctgctcttccttctcccag
cccaccccccacggacgctccgtctctctctcctcctacccttccaaacgctacgacgag
gagaaaggaggggggctctcagaccgcaggagaaagagaggaatagagggaggaggtggt
gatggaggaggagtggcatccctctctctttccctgtcctcctcaggccactctgtcatc
tccagtcccggaggcccagttccttctgcccttgccccccttggcctgtctcctctcctc
gggttgggggctgtcagagtggcctctacagtggtgaccaatgtggttcgtccggtcgtg
agcacgccagtccccatcgctagtaaaccccgagacggagcagcttcatccattcctcac
ccaccagacaggaggtccctcccattgcaacaggcgcagcttctgattggctccggagca
ggaagcggagggcctggctactactcctcatcgtcacccaatcccataggtgcaggggca
ggtccaggggggctagtgaacagcttggtgttcccggggcacagccagtccaccgtccag
ctcatcagtccctcccccaatccgtcctcccaccaccagctgccccccaccgcccctgtc
tctgcccccacacacaaccacaccaacggccccctgcccctctccctgccccagttcctc
tcctcgtcatctctggcatcccccgggggcaaagccatcacacaggtccaatacatcctg
cccaccctatcagccagctccaatcacaagagcccctcccctcagctgcacaacctgccg
aacagtatcttcaacctgccgacagctccgcccacccacatgtccatatccaatgggaag
caggtggggctgggctcgctgatgggatacgcctccagcccagccgtgggagtggtcagc
ccgggagccagagtgcaatcccagtccccagtcctacagggcaagatgctgcttcccatg
gcaacagtgaggacggcacccgcccctgcccaacagttccccctcgtggcgccacctctt
cctgtccagaatggagctcaagcaggaagcaagatcttccagatcgctcccatgcctgtt
gtccaatcccagctccagcaaggcggggcagggcatcctgggtgcccttttcccattacc
atgggaacggccacagtgttgcaccaaggttctgccccatctcagactgtgctgctgccg
cccccaccaaccaggatcacctatgtccagtccacgccaggagttccctctgctctgcct
ctggtctccacaacaacaggctcctcctcccctcagcaggcccagcccacccctggatct
gcatatgtttcgtcgcccctagcaacgctgggctttacagccatagccccccctggacag
aacctagtccaacccctcatcacaggtcagcctccccttcaggccccagtccagtcccct
acctgcccctccctcccctctggcccagcctctgcttcagggggacagataatcaccgcc
atctacccccctaccagcgtcaccatggcaactggggtggtctccatggctaccgggcca
cccagcatggtgtacacagtctccagctcctccagtctgtccacccacatcctgcccaaa
tacacattcgcccccgccacccccaccacacacactcacacacacacccagctccagtca
gacagacaaacaaacaggcacgtgggggagagacccacggacagaatgtctcactctcag
tcagagaaagcggcagacagaccagcggagacgcagcctgagctacaggcgtatggacag
acggacaggccaaccctcacgcaggcggacagacagactgagagggaagcccagaccttc
aataaaagcagcagcttagtggcgccaccaagtggctcctcattgtcactgcggccctgt
agcccccccctgccctctcacacttccacaggcagcgcaccaggcacccccaaacttccc
cagctcccggtgagaacccctcagaaaatcaaagccacagttgccaacatcccggtgggc
agctacgagggaggaggccgaggaaaggagagggagaagaaccgagagagggaaagggag
aaagaaagagagaacactggggccaacagtcgtttttcctttgagctggagcgtcctgtg
gagtcgacatccccctcccaacacacacacactgctgaggagcccccctctgacagaccc
cctgagggacacgaccctggggacaacactgacacatgcagcacagaggccagcaaaaag
gagtcagggtggaaggactccgtcccctcctcacccctgccccctcccttgggtacagac
cctgccctgccacctccccagagcgacaaagacgcccctcctcccaagaaggtgaaggcc
cgccccccgccactcaaaaggacctttgactctgtggacaaggtgttgtcagaggtgtat
tttgaggagcgttttgctcagctaccagaattcaggccagaggaggtgctgccctccccc
accctgcagagcctggccacctccccccgtgccattttgggcagctaccgccgcaagagg
aagaactccacagacctggactcgtccacagaggaccctgtgtctccgaagaggaggagc
agaaggcgctccagctgcagctcggagcccagcacacccaagagcgccgccaagtgtgag
ggagacgtcttcaccttcgaccgaccagcccccccgtctgtgtgtccccctccagggaca
ggtgctgatggagaggacatcctgggggagctggagtttgacaaggtgccctactcctct
ctgagacgcaccctggaccagagacgagccctcgtcatgcagctcttccaggagcatggc
ttcttcccgtcagcccaggccacggcagccttccaggcacgctactcagacatcttcccc
accaaggtgtgtctgcagctgaagatcagggaggtccgacagaagatcatgcagactgcc
gtcccctctgagaccaacgaggcctcctcgctccccggaccgtctggcgcccaatcaggg
gaagggacaggaggaggggcggagccattgggagaggaggcggatcgagagagggagggt
agtccagaagagccgagggattcgcaggagtcttctagatga
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