Oncorhynchus nerka (sockeye salmon): 115124537
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Entry
115124537 CDS
T07952
Name
(RefSeq) calponin homology domain-containing protein DDB_G0272472-like isoform X1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115124537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115124537
Membrane trafficking [BR:
one04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
115124537
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2
RBD-FIP
Motif
Other DBs
NCBI-GeneID:
115124537
NCBI-ProteinID:
XP_029509838
LinkDB
All DBs
Position
LG4:complement(25279229..25306045)
Genome browser
AA seq
1527 aa
AA seq
DB search
MSLSDQSQQWYPTSVQVTVLQARSLRIKGKNGTNDAYAIMQVAKDKFATSVAEKSVAPVW
KEEATFELPLFHNGNTEKCTLHVHVMHRALVGSDKLLGHAVINLLELSEVKSRNKTEWHK
LLDKAGKPDKDRGEVLVDIQFMKNNLTASMFDLSATDKPRSRLGKFKDKVRGKKKESLSD
SASAVVPSFTQVLTDSEGEGEGEGGADKEEKKKKNKLKSLFSPKSNLQRHGLSQSMSVLG
PLPEKDSSLSGSPSGLNEDSSEGKNKLKFLTHKRTGSSDSKASQGSLSLGRSKIHAPLAE
QSNLCINGSHLYTEHPHPRSARTGSTFSLASSGHGSMEDLRRAQGRKSSSTSMDSLTALK
QPSPWAEGESSRAEEDEEEEERVKMDDMKRKEEQERKKLEEERVRKEEQEKRRIGKEVER
LRFEEEEKTRKEEQENRKRMEEEEKIRVEEESRMLEERKRRLKAEGEERVKKKEQEMIRL
QEEQERWEEEERMRREEHERMKREDRLRKEDERKMREEEERLKREKEERIKEEEERIRRE
QEEDMQRREERQRKMREEEERLRMEEEMREEEVRVKREQDRLREEERRVREEEERVRKAE
EEDRLRAEMGIKRTEEEERIKREEEERLRKDEEERKIRKQEERIRILEEEMLRKDEEQRK
IREEEERIRRLEEEMLRKEEEERTIREEEERIRRFEEEMLRKDEEERKIREEEERIRRLE
EERLRKDEEERKIREEGERIRRFEEEMLRKEEAETMRLEEERGNEQERSDKEQKERFRVE
EENMKTEELRQEEKRRNAQMEEEQRHEEARAPLEEVEKQMEQYSEAKVTVCNNPFEEVSP
TSSFDDSSSNNLFEENPMTTTGPISCRINKVSAVKPRPSSWGNPSKPAISSNPFLSSSSP
ELESSMDSPRGARENRDAIDPSANLMEKKDPAPVAPINQPWARKDNWSSKSHCATPTLAK
TKPTKPPPPLRCQSSTALVGSGDDQGSVSGKDHSSVRQDKGPAPLPPDNQRWAHKDNWPS
KSNPGSATPTLTQKTPTNPQPPPRRHSATSLVGSEHDLHLNESVSQDDSDVRRDKRPAPL
PPDRPNQAPSQTQRDQSMTSVNRGHKDRVGASMSKVSQRVVQMITPLRSSSTATTEHISG
GQSSTHHGNQAEEPMPSATGGLVVAKHNKGPAPSRPQHLPGKTMPTPTVDVLDEQSNTEE
HDSSVEFGPNNPFAEDCRMEKSSGCGVEQSLTGERQGSPDSHNQQSCTSTDADLGPFQKR
VVGDTTELPTPDVLPAEDVSCPTKSTSAKRARAPLPPVKITSTFREEGAGKQSSGKLQSP
GAPTSSKLSSGNWVKKQNGGVGVALPCVTLAQPPCFPSPAPSSIPHPEPLKGSGGRRDCP
PQTTSSVPGQKTLLHAGALPSITEQYSGEEAGGRGDRSASSTRRPHPVKPLSSLENQPAS
NIHEGQAGKSTGILGGLQEKIKVKDTGVKGPYSQLTQEELISLVLKQQEQLSKRDDKIKE
LEQYIDNLLVRIIEEQPSILMTMNSLK
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgtctctatcggaccagagccaacagtggtatcccaccagcgtacaggtaactgtgctt
caggcaagaagcctgaggataaagggaaaaaatggcaccaacgacgcatacgccatcatg
caagtggccaaggataaattcgctacatcggtggcagaaaagagtgtggcaccggtgtgg
aaagaggaggccacgttcgagctgccgctcttccacaacggtaacacagagaagtgtaca
ttgcatgtccacgtaatgcaccgggctctcgtgggatcggacaagttgctcgggcacgca
gtcatcaacctgttggagctcagcgaggttaaatcccgcaataagactgaatggcataag
ctgttggataaggcaggcaagccagacaaagacaggggagaggttctggtggacatccag
tttatgaagaacaacctgacagccagcatgttcgacctctctgctacagacaagccgcgc
tcccgcctgggcaagttcaaggacaaggttcgaggcaagaagaaggagagtctgtcggac
tcagcgtctgccgtggtgccgtccttcacccaggttctgacggacagcgagggagagggg
gaaggggagggaggtgcagacaaagaagagaaaaagaagaaaaacaagctgaagtctctg
ttttcccccaagtctaatctgcagcgtcacggactgtctcaatccatgtctgtcctgggc
cctctgccggagaaggactcctcactgagtggcagcccctcaggcctcaatgaggactcc
tctgaaggtaaaaataaattaaagtttctgacccataagcgcacaggcagttccgacagt
aaggcttcccagggctccctgtctctagggcgctctaagatccatgccccgcttgcagag
cagagtaacctgtgcatcaacggcagtcacttgtacacagaacatccccatccccggagt
gcacgcaccggctccaccttcagccttgccagctcaggccacggttccatggaagaccta
cgtagggcccagggccgtaagagctccagcacctccatggactctctcacggccctgaag
cagccctcaccctgggcagagggggagagcagcagggcagaggaggatgaggaggaggaa
gaaagagttaagatggatgatatgaagagaaaggaagagcaggagagaaagaagttagag
gaagagagggtgaggaaggaggaacaagagaaaaggaggattgggaaggaggtagaaaga
cttaggtttgaggaggaagagaaaacaaggaaggaggagcaggaaaacagaaagaggatg
gaggaggaggaaaagattagggttgaggaggaaagtagaatgctggaagagaggaagagg
agactgaaggcggagggagaggagagggtaaagaagaaagaacaggaaatgattaggtta
caggaggaacaagagaggtgggaagaagaggaaaggatgaggcgagaagagcatgaaaga
atgaagagggaggatagactgaggaaggaggacgagaggaaaatgagggaggaggaggaa
agattgaagagggagaaagaggagaggattaaggaggaggaagaaaggattaggagagaa
caagaggaagatatgcaaagaagggaggaacggcagaggaagatgagggaggaggaagaa
agactaaggatggaagaggagatgagggaggaagaagtaagagtgaagagagagcaggat
aggctgagagaggaggagagaagagtgagggaggaggaagaaagagtgaggaaggccgag
gaggaagataggctgagagcggaaatggggataaagaggacagaggaggaggaaagaatt
aagagggaagaggaggagaggctgaggaaggatgaagaggagaggaagatcaggaagcag
gaagagaggataaggatattagaggaggagatgttgaggaaggatgaagagcagaggaag
atcagggaggaggaagagaggataaggagattagaggaggagatgttgagaaaggaggaa
gaggagaggacgattagggaggaggaagagaggataaggagatttgaggaggagatgttg
aggaaggatgaagaggagaggaagatcagggaggaggaagagaggataaggagattagag
gaggagaggctgaggaaggatgaagaggagaggaagatcagggaggagggagagaggata
aggagatttgaggaggagatgttgaggaaggaggaagcagaaacaatgaggcttgaagaa
gaaaggggcaatgaacaggagaggagtgataaggagcagaaagaaagatttagggtagag
gaagaaaatatgaaaacagaggagttgagacaggaagagaaaaggagaaatgcacagatg
gaggaagagcaaaggcatgaggaggcgagggcaccgttggaggaagttgagaagcagatg
gagcagtatagcgaggcaaaggtcactgtgtgcaataatccttttgaggaagtctctccc
accagttcatttgatgacagctcttcaaataatctgtttgaggagaaccctatgaccact
actggacccatcagctgccggataaataaagtatcagcagtcaagccaagaccctcttca
tgggggaacccttcaaagcctgctatatcttccaaccccttcttatcgtcctcgtctcct
gaactggagagttctatggactcccccagaggcgcaagggaaaatagagacgctattgac
ccgtctgctaatctgatggagaagaaagaccctgcccctgtggctcccatcaatcagccc
tgggctcgtaaggacaactggtctagtaaatctcattgtgccacacctaccctcgctaaa
acaaagccaacaaaaccgccccctcccctcagatgtcaatcttccacggcattggttgga
agtggggatgaccaggggagtgttagtggtaaggaccattccagtgtcagacaggataag
ggccctgctccactgcccccagacaaccagcgatgggctcataaggacaactggcccagt
aagtccaaccctggttctgccactcctaccctcacccaaaaaacgccaacaaatccgcag
cctcctccaagacgccactctgccacgtcattggtgggaagcgaacatgacctgcactta
aatgagagtgttagtcaggatgattccgatgtcaggagggacaagcgtcctgctccactg
cctcctgacagaccaaaccaggctccaagccagacacagagggaccagagtatgaccagt
gtgaatcggggacataaggacagagtgggtgcctccatgtccaaagtttctcaacgtgtg
gtacagatgatcacgccactgagatcttcctccacagctacaacagagcacatcagtgga
ggccagagctctacccaccatgggaaccaagcagaggaacccatgccatcagccactggg
gggttggtggttgcaaaacacaataaaggtccagcaccctccaggccccagcaccttcca
gggaagacaatgccaacgccaacagttgatgtgttagatgagcaatcaaatactgaggaa
catgactcttcggttgagtttggtccaaataatccctttgcagaagactgcagaatggag
aagtcctctggatgtggtgtagaacagagtctaactggtgagcgccaggggagcccggac
tctcacaatcaacagagttgtacctccacagatgcagatctaggtccgtttcagaagcgt
gtggttggggacacaactgagcttccaacgccagatgttctgccagccgaggatgtctcc
tgtcccaccaaaagcacatcagcgaagcgggcccgtgctcccttgcctcctgtgaagata
acatccacctttagagaggagggagctggtaaacagagttctggaaaactacaaagccca
ggggctcccacttcgagtaagctttcctcaggtaactgggtaaaaaagcagaatggcggg
gtgggtgtggcactaccatgtgttacacttgcccagcccccatgtttcccctcacctgcc
ccctcctccataccccaccccgagcccctgaagggatcagggggcaggagagactgccct
ccccagacaacaagctctgtccctggccagaagaccctgcttcatgctggagctctgccc
tccattacagagcagtacagtggagaggaggcaggagggagaggggacaggtctgcctca
agcacacgcaggccacacccagtaaagcccttgagttccctggaaaaccagccagcttcc
aacatccatgagggacaggctggcaaatctaccgggatcctcggtggccttcaagagaag
ataaaggtcaaagacacaggggtcaaaggtccctactcccagctgacccaggaagagctg
atctccctggtgctaaagcagcaggagcagctctccaaaagggacgataagattaaggag
ctggaacagtacattgacaacctgctggtgcgcatcatcgaggagcaacccagtatcctg
atgaccatgaactcactcaaatga
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integrated database retrieval system
