Oncorhynchus nerka (sockeye salmon): 115125397
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Entry
115125397 CDS
T07952
Name
(RefSeq) PDZ and LIM domain protein 7-like isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115125397
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
one04990
]
115125397
Domain-containing proteins not elsewhere classified [BR:
one04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
115125397
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-GeneID:
115125397
NCBI-ProteinID:
XP_029510766
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Position
LG4:26875119..26950590
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AA seq
616 aa
AA seq
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MSSNYSVSLVGPAPWGFRLQGGKDFCLPLTISRLTDGGKAAKARMSVGDVVLSIDGIATN
SMNHLEAQNKIKACTDDLNLTLQKASSVPKADAPKNEPLEIIKPVPITYPAPPSTFTSPS
PQPSAAYNKTARPFGGGSSVGVVTSSLTAPKVASIPSASSAFTPAAPSSQQPQPPFPLGS
HSRSPAPPIAAPPTRPSSGRSPFTTPSSSSSSSPARVTAPSSNPGAPQSSCYNTPINLYS
NANACEVAIGQRRGLLEAQGVVVDQIKDQFNGNRVEPELNHASPLSEASKKRMIEDTEDW
HPRTGTSQSRSFRILAQITGTENDQAQENSTGKKEVVEDALPSAHVTSVKTMTKVPGASR
NGVPPPTFKTPSAQVKPSWPAGGSAGFPKGGAAPSFGRVSNTAPVPKGPDRPAPQAHPKD
QDSLVQRAEHIAAGTRTPMCGHCDKVIRGPFLVAMGMSWHPEEFNCSHCHTSLVESGFVE
ERGTVYCAHCYEEFFAPTCTSCKQKVLGEVINALKQTWHVYCFLCASCQQPIRNNTFHME
DGLPYCERDYYQLFGTSCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCSTSLEGQAFFS
KKDKALCKKHAHTVKI
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagtgtctcgctggttggccccgccccctggggcttcagactgcag
ggaggaaaggacttctgtctgcccctcacaatctcacggctgaccgatgggggcaaggca
gccaaagccagaatgagtgtgggagatgtagttctgtcgatcgacggcatcgccaccaac
agcatgaaccacctggaggcccagaacaagatcaaagcctgcacagacgacctcaacctc
accctgcagaaagcttccagtgtccccaaggcggatgcaccaaagaacgaaccgctggag
atcattaagcctgtgccaatcacctacccagccccgccatccacattcaccagcccctcc
cctcagcccagtgctgcctacaataagacggcccgcccctttggcgggggcagcagtgtg
ggtgtggtaacttcctccctgactgccccaaaagtggcctcaatcccttctgcatcatct
gctttcacccccgctgccccctcctcccagcagccccagcctcccttcccactaggcagc
cactcccgctctccagccccacccatcgcagccccacccaccagacccagctctggccgt
tcccccttcaccaccccctcctcgtcctcctcttcctccccggccagagtgacagccccc
tcctccaatcctggtgctccgcagtcctcttgctataacacgcccatcaacctgtactcc
aacgccaacgcctgtgaggtggccataggacagaggcggggcctgttggaagcccagggt
gtggtagtcgaccagatcaaagaccagttcaacgggaacagagttgaaccagagttgaac
catgcctcaccactcagcgaggccagtaagaagcgtatgatcgaggacacggaggactgg
catcctcgcaccggcacctcccagtccaggtccttcagaatcctggctcagatcactggc
acagagaacgaccaagcccaggagaacagcactggaaagaaagaagttgttgaggatgcc
ctgcccagtgctcacgtcacatcagtgaagaccatgaccaaagtcccaggagcctccagg
aacggtgtccccccacccaccttcaagaccccctctgcccaggtcaaaccctcctggccg
gctggaggttcagcaggtttccctaagggtggagcggcgccctcttttggccgggtcagc
aacactgcaccggtacccaaaggtcctgaccgccctgctccccaggcgcaccccaaggac
caggactccctggtgcagcgggccgaacacatcgcagcaggaacacgcacacccatgtgt
ggccactgtgacaaggtcatcagaggtccgttcctggtggccatgggcatgtcgtggcac
cctgaggagtttaactgttcccactgccacacgtctctggtggagtctggcttcgtggag
gagaggggaacagtgtactgtgctcactgctatgaagagttctttgcccctacctgcacc
agctgcaagcagaaggtcctgggggaagtcatcaatgccctgaagcagacctggcatgtg
tactgcttcctgtgtgcatcctgccagcagccaatcagaaacaacaccttccacatggag
gacgggctgccatactgtgaaagagattattaccaactatttggtaccagttgccatggt
tgtgacttccccatcgaggcaggagacaagtttctggaggcgttaggattcacctggcat
gatacctgcttcgtatgtgcagtctgcagcaccagtttggagggccaagccttcttctct
aaaaaggacaaggccctgtgcaagaaacacgcccacacagtcaagatctga
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