Oncorhynchus nerka (sockeye salmon): 115125452
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Entry
115125452 CDS
T07952
Name
(RefSeq) regulator of nonsense transcripts 3A-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115125452
03015 mRNA surveillance pathway
115125452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115125452
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115125452
mRNA cycle factors
P-body specific factors
115125452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
Motif
Other DBs
NCBI-GeneID:
115125452
NCBI-ProteinID:
XP_029511180
LinkDB
All DBs
Position
LG1:993098..1027962
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AA seq
533 aa
AA seq
DB search
MVCDYREDSAPHKHSSTSSIAELFSLELSRGENDFHRRGRKMRSETDQMTGGREESVVEI
QFRDIPRGQDAVSVNSKQKEEKKEVFTKVVIRRLPPNLSKDQLEEQLSPLPSYDYFEFFP
ADQSLYPHLFSRVYINFRNPDDILLFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKL
KKKDSKAGSIEEDLEYRRFLENYSCDEEKSMATPETLLGEIEAKTKKLIAKRTTPLLEYI
KNKKLEKHRIREEKREQRRRRELEKKRQREEEKRKRREEERRKRKEADKQKKLSEKEIKI
KLLKKSDWDDDVDSDRLKDKGDSGDTERAKWDKPSGHMKSKETKDPGQMESDKEQREHGR
RQRDKDHRGRDEERKRQRHHYEFDKSMRCKEDTKWGKGYCQDRAKKDGQYHSSYSYDTCD
KVGKEVREDIGGSRKDRVRNKVSDKACVSQSVLTYQDRRTAQSERPHQIRGALPNKDRPA
MQLYQPGAHNRKRVSSAMKGYELPMNGSPEHAAADHCYEAVAMETGSEKSGDE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atggtgtgtgattaccgagaagatagcgcaccgcataaacacagcagcaccagctctata
gcagagctcttcagcttggaactctcgcgaggggaaaatgacttccacaggagagggaga
aagatgaggtctgaaacggaccaaatgaccgggggcagggaggaaagtgtcgtcgaaata
caattcagagatattccgaggggacaggacgccgtctccgtcaactcaaagcagaaagaa
gagaagaaggaggtctttactaaggtagtaataaggcgacttccacccaacctgtccaag
gaccagctggaagaacagctcagtcctcttccatcctatgactacttcgagtttttccct
gctgatcaaagcctctatccacacctgttctccagagtttacattaacttcagaaacccc
gacgacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggc
caggagtacccagctgtggtagagtttgccccctttcagaaagtctccaagaagaagctc
aaaaagaaagattccaaagctggaagcattgaagaagacctggagtaccggcggtttctg
gagaactactcctgtgatgaggagaagtccatggccacccctgaaaccctgctgggagag
atagaggccaagacaaagaaactcatagccaaaagaacaacacctcttctggagtacatc
aagaataagaaacttgagaagcacaggataagagaagagaagagagagcagcgtcgacgc
agggagctggagaagaaacggcagagggaggaggagaagaggaaacggagggaggaggag
agacgcaaacgcaaggaggcggataaacagaagaaactatcggagaaggagatcaagatc
aagctcctgaagaagagtgactgggacgatgatgtggactctgacaggctcaaggacaaa
ggagacagtggggacacagagagggccaagtgggacaaacccagtggacacatgaagtca
aaggaaaccaaggacccgggtcagatggagagcgataaggagcagagagagcacggccgc
aggcagagagacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccac
tacgagttcgacaagtccatgcggtgcaaggaggataccaagtggggtaaaggctactgc
caggaccgggcaaagaaagatggccaataccacagctcctactcctacgacacgtgcgac
aaggtgggcaaggaggtcagagaggacattggcggtagcaggaaggaccgcgtccggaac
aaggtgagcgacaaggcctgtgtctctcagtctgtgttaacctatcaggacagaaggacg
gcccagtcagagaggccacaccagatacgaggggctctgccaaacaaggaccggcctgcc
atgcagctctaccagccaggcgcacacaatcgcaagcgcgtgagctctgcgatgaaaggt
tatgagcttcccatgaacggctcgccagaacacgcggcggcggaccactgctacgaggcc
gtcgccatggaaacgggctcggaaaagagcggagacgagtag
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