Oncorhynchus nerka (sockeye salmon): 115125559
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Entry
115125559 CDS
T07952
Name
(RefSeq) nuclear pore complex protein Nup155-like
KO
K14312
nuclear pore complex protein Nup155
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115125559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115125559
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115125559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
HTH_Tnp_1_2
Motif
Other DBs
NCBI-GeneID:
115125559
NCBI-ProteinID:
XP_029510940
LinkDB
All DBs
Position
LG4:complement(27589570..27607971)
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AA seq
1391 aa
AA seq
DB search
MPSTLGPSSPAAALAEALESSGRLIDRHLQDDRCFPDLSELLNVPSHNMPSLSGGSDMDY
PLQGPGLISVPNLPELSAVRRVPLPPELVEQFSHMQCNCMMGVFPEICRAWLTIDNDIFM
WNYEDGGDVAYFDGLSETILSVGLVKPKAGIFQPHIHFLLVLATPVDVVILGLSFPKAQA
GLNDSMSGGMQLLPDPLYSIPTDNTYLLAITSTDLGRIFLAGKDGCLYEVAYQAEAGWFS
QRCRKINHSKSSLSFLVPSLLQFSFSEDDPVVQIAIDNSRNTLFTRSEKGVLQVYDLGVD
GQGMSRVAAMSQSSIVAAAGNVARTIDRSVFKPIIQISVIDRSESSDCHLLAVTHAGVRL
YFSTAPFAPPHAKQPGVRPCLLALVHVRLPPGFSASSTLQKPAKVHKALHSKGVLLMAAS
ETEDSDILWCINHDSFPFKKPLMEAQMMSNVDGHSWALCAIKEEKAPKISTPLNKDQVPL
TDSPVVVQQHNVPPQKFVLLSAKGSHIFHKLRPVDQLRHLLVSGTGGESEEVERFFKLHR
EEQACATALIVACSSAACDREVSQWATRAFFRYGGEAQMRFPSAHSAPSNVGALFGSPVP
GSPMPVGSSPMPNPSFLATPVPGMMPQSVSTPYIPATPMPSAPITGMSSGPEVVFSGKHN
GISVYFARIMGNIWDGSLAVEKTISKGNQAVSILESTASSSDLESVLLELRGLKDFLDKN
SQFSPSSLGAASFSSPANLQQRLLGFMRPDGGASSQQVQQELQRKYHTEAQAYEKMSLQG
IQQLVHRSCQTLALWKLLCDHQFSLIISELPMEFQDQMKGASFKDVVIRGRELTGALITA
LINVYIKDSASVDAISNHLRDICPLLYSSDDSVCSKANELLQGSRQIQTKIDKERTLRES
LQLYQLISQHTDLPLVCSQYRQVRFYEGVLELCLTAADKKDPQRLGPHFYKNGEPEEDQA
GALAFQERLSCYKCITDTMQELVNQSKAAPQSPSVPKQPGPPVMTSDPNMLSNEDATAHF
EQVIGLAQRSQDELFHIALYNWLIQADLTDKLLEVNSPYLEEHLMHMIKQDQSKVRNMDL
LWRYYEKSRSFGKAAHVLARLADMHSTEISLKQRLEYISRAILSAKSSSCISAQGAEGEF
LHELEEKMEVVRIQVQIQETLSRRYSQHPSVQGAMSQLDSELMDITKLYGEFADHFRLSE
CKLAIIHCAGHSDPILVHSLWQEIMEKELGDSVAMSPADRMRALSLKLVSLGKIYAGTPR
YFPLEFLVKFLEQEVCHLNWDVGFVTFTMQEIGVQLPRLLEVYDQLFKTRDPCWQRLKKP
LHLVECIHVLLSGYVEDPSRVPTYDRRRFTNVCLDNICGYLVELQSLSPNSTLRLTIGNF
KALQAKLGKVH
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccaccttgggacccagcagtcctgctgctgcccttgcggaagcgctggagagc
tctggccggctcatagacagacacctccaggatgaccgctgcttccctgacctctcagag
cttcttaatgtcccctcacacaacatgccatctttgtctggggggtcagacatggactac
cctcttcagggacctgggctgatcagcgtgccaaaccttcctgagctcagtgcagtccga
agggttcccctaccccctgagctggtggagcaattcagccatatgcagtgcaattgtatg
atgggagtttttcctgaaatctgtcgagcatggctcaccattgacaacgatatctttatg
tggaattatgaggatgggggggacgttgcatattttgacggactcagtgaaaccatcctg
tccgtggggctggtcaaacctaaagcagggattttccagccacacatccacttcctgttg
gtcctagccactcctgtggatgtagtgatcctggggctcagcttccctaaagctcaggca
gggttgaatgacagcatgtctggagggatgcagttactaccagacccgctgtactccatc
cccacagacaacacctacctcctggccatcacctccaccgacctgggccgcatcttcctg
gcagggaaagatggctgcctgtatgaggtagcctaccaggccgaggcaggctggttcagc
caacgctgcaggaagattaaccactccaaaagcagcctgtccttcctagtcccctctctg
ctccagttctccttctctgaggacgacccggtagtgcagattgccattgacaactcccgt
aacacactcttcacccgctcagagaagggggttctacaggtgtatgatctgggtgtagat
gggcagggtatgagccgtgtggcagccatgtcacagagttccatcgtggctgcagcagga
aacgttgccaggaccatagatcgctctgtgtttaaacccatcattcagatctctgtgata
gaccgatcggagtcgtccgactgccacctgctggctgtcactcatgcaggagtgcgtctc
tacttcagcaccgctccctttgccccaccacatgccaagcagccaggggtacgcccttgc
ctgcttgctctggtccatgtccgcctgcctccaggcttctctgcgtcctccaccctgcag
aagcctgccaaggtccacaaggctctgcacagcaaaggagttctcctgatggcagcgtct
gagactgaggacagtgacatcctgtggtgcatcaaccacgactccttcccctttaagaaa
cccctgatggaggctcagatgatgtccaatgtagatggccactcctgggcgctttgtgcc
atcaaggaggagaaggcacctaaaatctctacccccctgaataaggatcaggttcccctc
actgactctcctgtcgtggtgcagcaacacaatgtccctccacagaaatttgtccttctc
tctgccaagggaagtcacatcttccacaagttgcggccggtggaccagctgcgccaccta
ctggtgagcggtactggtggagagagtgaagaagtcgaacgcttcttcaaactgcacagg
gaggagcaggcatgtgccactgctctgatagtagcctgttccagtgctgcctgcgacaga
gaggtgtctcagtgggccaccagagccttctttaggtatggaggagaggctcagatgagg
ttcccctcggctcattctgctccgagcaacgtcggcgctctgttcggctctcctgtacca
gggtcccctatgccggttggtagcagtccaatgcctaaccctagtttcttagcaacgcct
gttccaggtatgatgccccagagtgtgtctacgccctatataccagccacgcccatgccc
tccgcccccatcactggcatgtcttctgggccagaggtggtcttctcagggaaacacaat
ggcatcagtgtctacttcgcacgcataatgggtaatatctgggatgggagtcttgctgtt
gagaagaccatcagtaaaggaaatcaggctgtcagtattttggagagcacagccagctca
tctgatctggagtcagttcttctggagctccgtggtctgaaggacttcctggataagaac
tcccagttcagcccctcgtctctgggggcagccagtttcagctctccagccaatctgcag
cagcgtctgctgggcttcatgcggcctgatggaggagccagttctcagcaggtccagcag
gaactccagaggaagtaccacaccgaggctcaggcctatgagaagatgtccctgcagggt
atccagcagctggtgcatcgctcctgtcagaccctggcactgtggaagctgctgtgtgac
caccagtttagcctcatcatctctgaactgcccatggagttccaggaccagatgaagggg
gctagttttaaggacgtagtgatccggggtcgagagctgaccggagctctgatcacagcc
ctcatcaacgtctacatcaaagactccgcctctgtcgatgccatcagcaaccaccttaga
gacatctgtcctttgctgtacagcagcgacgacagcgtctgctcaaaggctaatgagttg
ctgcagggctccagacagatccagactaagatcgataaggagagaacacttagagagtca
ctacaactctaccagctgatcagccaacacacagacctgccactggtctgctcccagtac
agacaggtgcgtttttatgagggggtgcttgagctgtgcctgactgcagcggataagaag
gatcctcagaggctgggacctcacttctataagaacggagaaccagaggaggaccaggct
ggagcactggccttccaggagaggttgtcatgttataagtgcatcacagacaccatgcag
gagctggtgaaccagagtaaagcggctcctcagtctcccagtgtccctaagcagccagga
ccccctgttatgacctctgaccccaacatgctgagtaatgaggatgccaccgcccacttt
gagcaggtcattggtctggcccagaggtcacaggatgaactcttccacatagccctctac
aactggctgatacaggctgacctcaccgacaagcttctggaggtgaactctccatacctg
gaggaacacctgatgcacatgatcaagcaggaccagagtaaggtgcggaacatggacctg
ctgtggcggtactatgagaagagccgtagctttggcaaggcagctcacgtcctggccagg
ctcgctgacatgcacagtactgagatctccctgaagcagaggctggagtacatctccagg
gccatcctgtcagccaagagctcctcctgcatctctgctcaaggagctgaaggggagttc
ctgcatgagctggaggagaagatggaggtggtgcgtattcaggtccagatccaggagact
ctgagcagacgttactcccagcatccctctgtacagggagccatgtcacaactggattcc
gagcttatggacatcaccaagctgtatggggagtttgcagatcacttccggttatctgaa
tgcaaactggccatcatccactgtgctggtcactctgaccccatcctggtgcactctctg
tggcaggagatcatggagaaagagctgggtgacagtgtggccatgagtccagctgacagg
atgagagctctgagtctcaaactggtgtctctggggaaaatctacgcaggaacacccaga
tactttccactagaattcctggtgaagtttttggagcaggaggtgtgtcatctgaattgg
gacgtgggctttgtcaccttcaccatgcaggagataggagtacagctcccccgtctgctg
gaggtctacgaccaactcttcaagacacgggatccgtgttggcagcgtctgaagaaacct
ctccacctggtagagtgtatacatgtgctgctgtcaggatacgtagaggaccccagcaga
gtaccaacatatgaccgacggcggttcactaatgtgtgtctggataacatctgtggttac
ctggtggagctgcagtccctgagtcctaactctaccctgcggctcaccatcggcaacttc
aaggccctgcaggccaagctggggaaagttcactga
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