Oncorhynchus nerka (sockeye salmon): 115125724
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Entry
115125724 CDS
T07952
Name
(RefSeq) tRNA pseudouridine synthase A-like isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
one03016
]
115125724
Enzymes [BR:
one01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
115125724
Transfer RNA biogenesis [BR:
one03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
115125724
Prokaryotic type
115125724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-GeneID:
115125724
NCBI-ProteinID:
XP_029511127
LinkDB
All DBs
Position
Unknown
AA seq
430 aa
AA seq
DB search
MRSAKQIPKKKKKKKESSLSESHTKKKGWLYKCAGIRWIMSEESGNVQNKPLKRVEEGDG
ESGEHIRKKLKSDVEQTGDERKHPKRKVVLLLAYSGKGYYGMQRNAGSSQFKTIEDELVT
ALIKSGCIPENHGDDMKKMSFQRCARTDKGVSAAGQVVSLKLWMIEDIMEKLNSNLPPQI
RVLGLKRVTGGFNSKNSCDARTYSYMLPTVAFAPKDYSTENSIAFRLEPETLQRVNGLFG
RYKGTHNFHNFTSQKAARDPSARRYITEMTCGEPFVRSGAEFAEITVRGQSFMMHQIRKM
IGLVIAVVKGYSGDEVLKRSWGEEKVDVPKAPGLGLVLEKVHFDMYNKRFGGDGLHECLE
WTEEEQAILAFKEEHIYPSIVETECQEGSMASWMATLPIHDFKATAKGAQDKDRGQDDDD
DEGDGSDSAL
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgatctgccaagcaaatcccaaagaagaagaagaagaagaaggagtccagtttgtca
gaaagccacacgaagaagaaaggttggctttacaagtgtgcagggataaggtggataatg
agtgaagaatcagggaatgtgcagaacaagccactgaaacgagtggaggagggcgatgga
gagtcgggtgagcacatcagaaagaagctcaagtctgatgtagaacagactggcgatgag
aggaaacaccccaaaagaaaagtggtcctgcttttggcgtattcaggcaaaggttactac
ggtatgcagagaaatgctggatcttcccagttcaaaaccattgaggatgagctggttaca
gcactgatcaagtctgggtgtatcccagaaaaccatggagatgatatgaaaaaaatgtca
ttccaaagatgtgcaagaacggacaagggtgtttctgcagcaggtcaagtggtctctcta
aaactatggatgattgaagacattatggaaaagctcaactccaatcttccaccacagatc
cgagtgctgggtctgaaacgagtgactgggggcttcaattctaaaaacagctgtgatgct
cgcacatactcctacatgcttcccactgtggccttcgccccaaaagactatagcactgag
aattctattgcattccgcctggagccagagacactgcagagagtaaatggtctgtttggc
agatacaagggcactcataactttcacaacttcacctcccagaaggccgcgcgggacccc
agcgcccgccgttacatcacagagatgacctgtggcgagccctttgtgcgcagcggcgct
gagtttgctgagattactgtgcgtggccagagcttcatgatgcatcaaatccggaaaatg
attggcctggtgatagctgtggtgaagggttattctggggatgaggtgttaaagcgaagc
tggggcgaggagaaggtggatgtgcccaaggcccctgggctgggcctggtgctcgagaag
gtgcactttgacatgtataacaagcgcttcggcggggacggcctccatgagtgcctggag
tggactgaagaggagcaggctatcttggccttcaaggaggaacacatctaccccagcatt
gtggagactgagtgccaggaagggtccatggccagctggatggccacactgcccatacac
gactttaaggccactgcaaaaggggcccaggataaggacagggggcaggatgatgatgat
gatgagggtgatggttcagattctgcactttga
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