Oncorhynchus nerka (sockeye salmon): 115125741
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Entry
115125741 CDS
T07952
Name
(RefSeq) synaptopodin-like
KO
K21112
synaptopodin
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115125741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
115125741
NCBI-ProteinID:
XP_029511162
LinkDB
All DBs
Position
Unknown
AA seq
838 aa
AA seq
DB search
METERGHMSVRRGVSWSPGGGRKSLQGGQGRDVDTGNRESNASWEKRDNRGIKGQVTSTS
TNQLARKTNLTRSASLSEKELKEARVRSQIIAAQLTVPSGCSNSRGVQLFNRRQQRVNAF
TLESCGERTREEEREERDGDTRNNNLTWEEERGGPSEGTETDRQLNRSGIKQPLWSPPSG
SDVMKDPGDEHIYEEVETVTQERHFQPVNERQGEEEERSGEREREEIYEDIEGEVKDEIM
SVNENNTGPVREEVGMNRGSYTYPTAPPETRNGFHSTQGSAGEIQNGGRVSMSLSRQAPT
IVNRTARPFFSPPTVQPKSPEARSPVMDNNIPPVPSYPTPTLPPASSDSTPPLPPFTATR
PVAFSPPPPPPSYPMPPLPAFPIHPPPPSKSLSSPPAMSTVMFPRSTPVPQYNPPPTAAP
VSQYLPPHPPVTHNIPPPSSPRPNTFVPFTPQPIGQQNQQQPIKTGILEEGAAAIRRSST
ARKSMFTFKEKPVMAPNPELLSLVQGNDDRKKHGLRSVPDSAPEEELLALGAEASNFLAK
EEVKEEAANVPEWSSCLKSSRTREPRGQHQPEQILTNASGKGAELFAKRQSRMEKYVVEN
QNVSGGGGGQMRSPSPTASLPPSWVYPSNMPGRVKAIANNTDLSARLTRTLQTPQPSNRR
PSQQAQTPAPVPEEPPLENGCTKIEMDLSRHKPYQLNSSLFIFNPVQDSTSTLLSALPRG
APPPPKPLVSSEAYSRQASLPSSNPPSHNYNSLPRFRPTMSPSLQPPSGGIGGGDNDPPQ
HGGTPQLRDTRITSPVSIFSPDRVASPRSSVQAPRPTFSAKRAGIEPQVWRPSFFFYQ
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggagacggagaggggtcatatgtctgtgaggaggggggtaagctggagcccaggtggg
gggaggaagtctcttcagggggggcagggcagggatgtggacaccggcaacagagagagc
aatgcatcttgggagaagcgggacaacagaggaatcaaaggacaggtgacatcgacctcc
accaatcagctggctcggaaaaccaacctgacacgtagtgccagcctatcagagaaggag
ttgaaggaggcgagggtgaggtcacagatcatcgctgcccagttgaccgtcccgtctggc
tgctccaactcccgcggagtccagctcttcaaccgccgccagcagagagtcaacgccttc
acgctagagagctgcggggaaagaacaagggaagaggagcgagaggagagagacggagat
accaggaataacaacctgacatgggaagaagagcgagggggacctagtgaggggacagag
acagacagacaactgaaccgcagcgggataaaacaaccactctggtcgccaccctctgga
agtgacgtcatgaaggacccaggtgacgagcacatctacgaggaagtggaaacagtgaca
caggagagacacttccagccggtgaacgagagacaaggggaggaggaagagaggagtgga
gagagagaaagagaggaaatatacgaggatattgagggtgaagtgaaggatgagataatg
tcagtaaatgaaaacaacaccggtccagtcagagaggaagtggggatgaatagggggtca
tacacttaccccacagctccccctgagacccgtaatggcttccacagcacccagggctct
gctggagagatccagaatggaggccgagtttctatgtccctgtccagacaggcccccacc
atcgtcaaccggacagccagacccttcttctccccgcccaccgtacaacccaagtcccca
gaggccaggagtcccgtcatggataacaacatacctccagttccctcttatcctacccca
actcttcccccagcttcctcagactccactccccctctccctcctttcactgccactcgc
cccgtagccttctcccctcctccccctcctccctcataccccatgcctcctctcccagcc
ttcccaatccatcctcctcctccctccaagtctctctccagtcctcccgccatgtctacc
gtcatgttccctagatctacacccgtcccccagtacaaccctcctcctacagctgcccca
gtgtcccagtatctaccccctcaccctcctgtcacccacaacatccctcctccaagttcc
cctagacccaacacctttgtccccttcacccctcagcctataggccaacagaaccagcag
cagccaatcaaaacgggaatcctggaggaaggggcggcggccatcagacgatcgtcgaca
gccaggaagtccatgttcacctttaaggagaagcctgtcatggcacccaaccctgaactc
ctctctctggtccaggggaacgatgataggaagaagcacggcctccgctccgttcccgac
tcagccccagaggaggagctgctggctctgggggccgaggcctctaacttcctagccaag
gaggaggtgaaggaggaggctgccaatgtgccggagtggtcctcctgtctcaagagctcc
aggaccagggagcccagggggcagcaccagccagagcagatcctgaccaacgcatcaggg
aagggggccgagctattcgctaagcgccagtccaggatggagaagtacgtagtggagaac
cagaatgtctccggtggtggaggtggtcagatgaggtctccgtctcccacagcatctctg
ccgccatcttgggtctatccatctaatatgcctggccgggtcaaagctattgctaacaac
actgacctcagtgccaggctgacccggaccctccagacccctcagccctcgaacaggagg
cccagccagcaggctcaaactccggccccagtccccgaggaaccacccttggagaacggc
tgcaccaagatagagatggatctctccaggcacaagccctaccagctcaactcctccctg
ttcatcttcaacccagtccaggactctaccagcaccctgctgagcgctctgccccggggg
gccccgccaccacctaaacccctggtctcatctgaggcctactccaggcaggcctccctg
ccctcctccaaccctccatcacacaactacaacagcctgccccgcttcaggcctaccatg
tccccttcacttcagcccccatcaggaggaattggaggtggggataacgatcctcctcaa
cacgggggaactccacagctgagggacaccaggatcacctctcctgtctctatcttctct
ccggacagagtggcctctcctcggtcgagcgtccaggcacccagacccaccttctctgcc
aagagggcagggatcgaaccccaggtgtggaggccttctttcttcttctaccaatag
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