KEGG   Oncorhynchus nerka (sockeye salmon): 115125834
Entry
115125834         CDS       T07952                                 
Name
(RefSeq) nucleoporin SEH1
  KO
K14299  nucleoporin SEH1
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03013  Nucleocytoplasmic transport
one04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    115125834
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    115125834
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:one03019]
    115125834
   04131 Membrane trafficking [BR:one04131]
    115125834
Messenger RNA biogenesis [BR:one03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     115125834
Membrane trafficking [BR:one04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    115125834
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_RIG_2nd EIF3I WDR55 Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_IFT122_1st Ge1_WD40 YxiG_2
Other DBs
NCBI-GeneID: 115125834
NCBI-ProteinID: XP_029511261
LinkDB
Position
Unknown
AA seq 206 aa
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVMRVYEAPDVMNLSQWSLQQEISSKLSCSCISWSPSSSRAHAP
MIAVGSDDSNTAYNGKVHIYEYIENT
NT seq 620 nt   +upstreamnt  +downstreamnt
atgtttgtcgctcgaagtattgcagcggaccacaaggatcttattcatgatgtttcatat
gatttccatggccggagaatggcaacttgctctagtgaccaaagtgtcaaggtgtgggac
aagagtgacaacggagagtggaactgcactgccagctggaagacccatagtggatcagta
tggagggtgacctgggcccatccagagtttggtcaggtgctggcctcctgctccttcgac
cggaccgctgctgtgtgggaggagatcgttggggagtccaatgacaaacagcgaggactc
agtcactggatcaagaggaccactctggtggacagcagaacgtcagtgactgacgtgaag
tttgctcctaaacacatgggtctgatgctgaccacgtgctcagcagacggggttatgagg
gtctacgaggctccagacgtgatgaacctcagccagtggtccctgcagcaggagatctcc
tctaaactcagctgctcctgtatctcctggagcccctccagctctcgtgcccacgccccc
atgatagcagtgggctctgatgacagcaacacagcatacaacgggaaagttcacatctat
gaatacattgaaaacacaag

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