Oncorhynchus nerka (sockeye salmon): 115126030
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Entry
115126030 CDS
T07952
Name
(RefSeq) very low-density lipoprotein receptor-like isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115126030
Membrane trafficking [BR:
one04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
115126030
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
EGF_CA
SGL
cEGF
Motif
Other DBs
NCBI-GeneID:
115126030
NCBI-ProteinID:
XP_029511479
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Position
LG4:complement(28961133..28976137)
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AA seq
878 aa
AA seq
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MVTSILGLLILPICLQQCGVVHGSKTECEPSQFQCGNGRCIPSVWQCDGDEDCSDGSDEH
ICVRKTCAEVDFVCRNGQCVPKRWHCDGEPDCEDGSDESVDVCHTRTCRVNEFSCGAGST
QCIPVFWKCDGEKDCDNGEDEIDCGNITCASLEFTCASGRCISLNFVCNGEDDCGDGSDE
QECAPSSCGPSEFQCGNATCIPGSWVCDDDVDCQDQSDESPQRCGRHPTPPAKCSPSETQ
CGSGECIHRKWRCDGDSDCKDGSDEANCSVRTCRPDQFKCEDGTCIHGSRQCNSLRDCAD
GTDEVNCKNLTQCNGPDRFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNLNECLLNNG
GCSHLCRDMVIGYECDCTPGLQLIDRKTCGDIDECMNPGICSQICINLKGGYKCECHNSY
QMDPTTGVCKAVGTEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFTQQTLFW
ADLSQRAIFSTVLDKRGDVGSHVKVIDNVQTPVGIAVDWIYKNLYWSDLGTKTIAVANFI
GTKRKVLFDSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVETDIQWPN
GITLDLIKSRLYWVDSKLHMLSSVDLNGDNRRKVLQSPEYLAHPFAVTVFEDRVFWTDGE
NEAIYGANKFTGSDVITLASNLNEPQDIIVYHELIQLPGTNWCNEKAQNGGCAYMCLPAP
QINKYSPKYTCVCPKDQTLASNGLHCQPVSPSTPSKDDGKALIRPTDPQVTTVPKVVPQP
VPAEANVSTAIREVDSTARGSAAAWVILPVLFLAMAAAGGYLMWRNWQLKNKKSINFDNP
VYLKTTEDDLNIDISRHSSNIGHTYPAISVVNTEDDLS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtctattcttgggctccttatcctaccaatatgtcttcagcagtgtggtgtt
gtacacggatcgaagacagaatgtgagcccagtcagttccagtgtgggaatggccgctgc
atcccatctgtctggcagtgtgacggggatgaggactgctccgacggcagtgacgagcac
atctgtgttcgtaagacctgtgcggaggtggattttgtctgtcgcaatggccaatgcgtc
cccaagagatggcactgcgacggtgagccagactgtgaggatggctctgacgagagcgtg
gatgtttgccacaccaggacctgccgtgtgaatgagtttagctgtggtgccgggtccacc
caatgcatcccggtcttctggaagtgtgatggagagaaggactgcgataacggcgaggat
gaaattgactgcggtaacatcacgtgcgcctcgctggagttcacctgtgcgagcggccgc
tgcatctcccttaactttgtgtgcaacggcgaggacgactgtggcgacgggagtgacgag
caggagtgtgccccgtcgtcctgcggccccagcgagtttcagtgtggcaacgccacctgt
atccctggcagctgggtgtgtgacgatgacgtggattgccaggaccaatcggacgaatcc
cctcagcgctgtggtcgccaccccacgcccccggctaaatgttcacccagcgagacgcag
tgtggctctggggagtgcatccaccgcaagtggcgctgtgacggagactccgactgcaag
gacggcagtgacgaagcaaactgttctgttcgtacctgcaggccagaccagttcaagtgc
gaggacggcacctgtatccacggcagcagacagtgcaacagcttgcgtgattgtgcagat
ggcaccgacgaagtcaactgcaaaaacttgacgcagtgcaacggccctgacaggttcaag
tgtcggagtggcgagtgtatcgagatgagcaaagtgtgcaacaaggcccgggactgtcct
gactggagcgacgagcccatcaaagagtgcaacctgaacgagtgtctgctgaacaatggc
ggctgctcccacctgtgcagggacatggtgattggctacgagtgtgactgcacccctgga
ctgcagctcatagaccgtaaaacctgtggggacatcgacgagtgtatgaatcctgggatc
tgtagtcagatctgtatcaacctgaagggagggtataagtgcgagtgccacaacagttac
cagatggaccccaccacgggagtgtgcaaggctgtaggcacggagccctgtctgatcttc
actaaccggagggacatccggaagctgggtctggagaggagggagtacacgcagatcgtg
gagcagctgcggaacaccgtggcactggatgcagacttcacccagcagacgctcttctgg
gctgacctgagccagagggccatcttcagcacggtgttggataagcgaggagatgtagga
agtcatgtgaaggtgatagataacgtccagacaccagtggggatcgcagttgactggatc
tacaagaacctctactggtcagacctcggtaccaagaccatagctgtggccaacttcatc
ggcaccaaacggaaagttctctttgacagcggtttgaaagagcctgcgtccatcgctgtt
gatccactctctggattcttgtactggtcagattggggtgaaccagctaagattgagaag
tctggcatgaacggggttgacaggcaggtcctggtcgagactgatattcagtggcccaat
ggaatcactctggacctgatcaagagtagactgtattgggtggactcaaagttgcacatg
ctctctagtgtcgacctgaacggagacaaccggaggaaagtgctccagtccccagaatac
ctggctcaccccttcgctgtcactgtgtttgaggatcgagtgttttggacagatggggag
aacgaggcaatctacggcgcaaacaagttcacaggctctgatgtgattaccctggcaagc
aatctgaacgagccacaggacatcattgtttaccacgagctaatccagctgcctgggaca
aactggtgcaatgagaaggctcagaatggtggctgtgcctacatgtgcctgccagctcca
cagatcaacaaatactcccccaaatacacgtgcgtgtgtccgaaagaccagacgctcgct
tcaaacggccttcactgtcaaccagtgagcccttctactccctcaaaggatgatgggaaa
gctctaatacgtcccactgacccccaagtgaccacggtgccaaaagttgtcccccaacct
gtccctgctgaagccaacgtcagtacagccatccgtgaggtggactctacagctagagga
tctgcagctgcctgggttatcctccctgtgttgttcctggccatggctgctgcaggaggc
tacttgatgtggcgtaactggcagctgaagaataaaaagagcattaactttgacaatcca
gtgtacctgaaaaccaccgaagacgacctcaacattgatatcagcaggcactcctccaat
ataggccacacctacccagcaatatcagttgtgaatacagaagatgacttgtcataa
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