Oncorhynchus nerka (sockeye salmon): 115126043 Help Entry 115126043         CDS       T07952                                  Name (RefSeq) collagen alpha-2(IV) chain-like   KO K06237   collagen type IV alpha Organism one  Oncorhynchus nerka (sockeye salmon) Pathway one04382   Cornified envelope formation one04510   Focal adhesion one04512   ECM-receptor interaction one04518   Integrin signaling one04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:one00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     115126043    04518 Integrin signaling     115126043  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     115126043   09142 Cell motility    04820 Cytoskeleton in muscle cells     115126043  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     115126043  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:one04147]     115126043    00536 Glycosaminoglycan binding proteins [BR:one00536]     115126043 Exosome [BR:one04147]  Exosomal proteins   Exosomal proteins of other cancer cells    115126043 Glycosaminoglycan binding proteins [BR:one00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    115126043 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  115126043 NCBI-ProteinID:  XP_029511518 LinkDB All DBs Position LG1:complement(24061792..24169636) Genome browser AA seq 1682 aa AA seqDB search MKFEVRMSGTMQTRHRIELKSLKFLFLCLSVAILASGVDAGGKKHNGPCGGRDCSGGCKC FPEKGARGQPGPLGPQGPHGPPGGLGDPGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGF SGSDGIPGHPGQAGTRGKPGADGCNGTHGDSGLSGKPGYDGQPGYNGQAGRKGQKGDTLE LSVFMERFRGDSGQPGYPGFVGPQGYPGRSGYRGLPGPQGPLGFPGLPGPKGTMTKVLKG VKGEAGEAGQQGPPGNSTHSHTSPLTGPYGRKGEKGLKGETGVEADNKGETGIMGMPGQR GVPGRDGEQGLRGDLGEPGFRGRDGQKGAIGEPGELIYYEGPSGGPNRVGPPGQLGPQGE MGLQGEKGLPGRAGPPARKSDSQIQVEYLWGPFGEPGVKGEKGPPGEPGIPALSPGPPGI GGISGLRGPPGPPGSWADFYKGFAGSRGRPGSAGRKGLKGDHGLCECNIVNSPPGLPGPA GSQGDPGMSGEFGQQGEPGEPGPRGVIGLPGFPGATGQPGPKGRKGELIWAKEKGYAGDP GDPGATGDPGLQGFPGPSGINGFPGNRGLSGDAPEGLTGEKGYPGRSGLPGLFGQMGEPG RVLGATKGVRGLQGDDGEPGYAGVEGRAGDPGVSGCSPRGDGRLNDKGDCDAVPGPPGMP GPPGPQGLVGIPGIPGQNGFTGPLGDDGAKGEIGEQGIGGSPGQPGFTGPRGDLGQPGAK GKPGDQGLPGQQGRDGESGEKGPHGEIWGASTGQTGEVGLPGEQGPKGFSGEPGNEGYPG MGGMPGMIGFKGDVGPSGLQGEQGRPGAAGKYGWKGVPGQAGVHGPTGSIGQPGLSGGRG DQGDPGAPGPIGLKGTPGEFGGLGAEGNAGHLGDPGEPGPTGHSGLPGFKGIKGSIGMSG FGGMPGESGLKGFSGQKGEDGIPGGFGQKGIMGDYGSKGERGLSGLPGEKPLIPRQIIND MKGTKGEDGTPGQIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDKKGFPGNPGAQGLPGPK GMPGPTGSNGISGFPGMSGHRGEKGTPGAYGSSGDPGVKGVKGEEGPIIDMPGSTGLRGE DGFPGVPGQKGYIGNPGDRGGGFHGIDGMKGGLGEPGIGGPLGSDGQGGFQGNQGTKGWP GIPGESGTNGRPGFPGQRGFPGLKGILGLDGLKGEKGIPGLPGQDNLGTPGVPGAKGTRG ETGIPNSEVGTPGSLGLKGVQGQPGDQGQVGPPGFQGPQGPQGTSDKPGPSGDPGFPGPK GLPGFPGPRGYPGEPSPYGEKGLAGHYGFPGFSGLKGKQGDQGPSGYKGQSGVSGKKGVK GEQGMMGIPGRFGFQGDRGPSGPKGNTGLIGYPGAPGNQGPAPVPPRMPGERGAPGPQGI RGPEGVRGETGPKGPPGAPGYLGPQGQKGMPGVGGRPGTPGYRGNDGGRGHLGLQGMEGH RGNPGTTGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQ DLGLAGSCLPRFNTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVEEEEIKPYISR CSVCEAPSVAIAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLED FRTTPFIECNGAKGTCHYFANKHSFWLTSIEQSFQAEPASETLKAGQFLSRISRCQVCMK NL NT seq 5049 nt NT seq  +upstreamnt  +downstreamnt atgaagtttgaagttcggatgagcgggacaatgcagacaagacaccggattgaattgaag agcctgaagtttctgtttctatgtctttccgtggccatcctagcatcgggagttgacgca ggtggtaagaagcacaatgggccatgtggaggaagagactgcagcggaggatgcaaatgt ttccctgagaagggtgccaggggccaacctggtcctcttggcccgcagggaccccatggg cctccagggggcctaggggatccaggagtccaaggagtccaaggagagaagggcgaccgg ggcagaggaggcttcatcggccccaagggttctgtggggatgactggtgttcctgggttt tctggatctgacggtattcctggccatccaggacaggcagggactcgtgggaaacctgga gcagacgggtgcaacggaacacatggagattcagggttgtcagggaaaccaggctacgat ggccagcccgggtataatggtcaggcaggcagaaagggacagaagggagacactctggag cttagtgtgttcatggagcggttcaggggagattcaggacagcccggatatcctggattt gttggtcctcagggttacccaggtcggtcgggctacagaggactcccaggaccacagggc ccattagggttccctggccttcctggaccaaagggcaccatgaccaaagtgttgaagggg gtcaaaggagaagcgggtgaggctggacagcaaggtcccccagggaactccacccattct cataccagcccacttaccggaccctacggcagaaagggtgaaaaagggttgaaaggtgaa actggagttgaggctgacaacaaaggagagactgggattatggggatgcctgggcaaagg ggtgtccctggtcgggatggagagcaaggactaaggggggaccttggagaaccaggattt aggggcagagatggccaaaagggtgccatcggagaacctggggagttgatctattatgaa ggtccctcaggagggcctaacagagttggtccccctggacagctgggaccccagggagag atgggtttgcagggggagaaaggtctgccaggccgggctggacctcctgctaggaagagt gatagtcaaatacaagtggagtacctgtggggtccgttcggggaaccgggggtaaaggga gagaagggcccacctggagagccaggtatccctgctctcagccccggacccccaggtatc ggcggaatatctgggttgaggggcccacctggaccaccaggatcatgggcagacttctac aagggatttgctgggtcgagagggcggccaggctctgcagggagaaaaggactgaaaggt gatcacgggttgtgtgagtgcaacattgtcaactctcctccgggcctgcctggccctgct ggcagccaaggcgaccctggaatgagtggcgagtttggtcagcagggcgagccaggcgag ccaggaccccgaggtgtcatcggactgcctgggttccctggtgccacaggacaaccgggt ccaaagggcaggaagggcgagttaatttgggccaaagagaaaggatatgccggggaccca ggagacccgggtgcgactggtgacccaggattgcagggcttccctggaccaagtgggatc aatggattccctgggaaccgtggtctttcaggggacgcacctgagggactcactggagaa aagggttatcctggccggtcgggtctccctgggttgtttggacagatgggagaaccggga cgggttctaggtgccactaaaggggtcagagggttacaaggcgatgatggggagccgggt tacgctggcgtcgaaggtcgagctggagatccaggagtgtctggctgtagtccgagagga gatggacgactgaatgacaaaggcgattgtgatgccgtacccggaccacccggtatgcca ggaccaccaggaccccaaggattagtgggtatcccaggcatcccaggtcaaaatggattc acaggtccacttggagatgacggggccaaaggagagataggagagcaaggcataggaggg tctcccggacagccaggtttcactggcccccgtggagacttgggtcagcccggcgccaag ggtaaacctggagatcaaggtctgccaggccaacagggtcgggacggggagtccggggaa aagggaccacacggggagatctggggagcgtcgaccggacaaactggagaagtgggtctt cctggagagcagggacctaaaggttttagcggagagcctggaaacgagggctacccaggg atgggtggcatgcctgggatgattgggttcaagggcgacgtgggtccttcaggtctacag ggggagcaaggaagaccgggagctgctgggaagtacggctggaaaggtgtacccggacag gcgggagtccatggaccaacaggaagcatcggacaaccaggtttgagcggaggcaggggt gatcagggcgaccctggcgccccggggccaataggactgaaggggacaccaggggagttt ggaggtctgggtgctgagggaaacgccggacacctgggtgaccctggagagccaggacct acaggacactctggcctgccagggttcaaaggtatcaaaggttctattggcatgtcaggg tttggaggtatgcccggtgagtcgggcctgaagggcttctctggacagaagggagaggat ggcatacctggcggatttggacagaaaggaatcatgggtgactatggttcaaagggtgaa cgtggtctgagtggcctgccaggcgagaaacccctcatccctcgtcagatcatcaatgac atgaaggggaccaagggagaagatggaaccccaggacaaatcggatttactggacccaga ggtcctaaaggctttcccggagttccaggtatggagggctaccatggcgttcccggagac cccagcgataagaagggtttcccaggcaacccaggggcgcagggacttccagggccaaaa ggaatgccaggtccgactggatcaaacggaatcagcggctttcctgggatgtctggtcac aggggggagaaaggtaccccgggtgcctacggatcttcaggagatccaggagtgaagggt gtcaaaggtgaggagggtcccataatcgacatgcctggatccacaggactgaggggggag gatggtttcccaggggttccaggtcagaagggctacattgggaatccgggagacaggggc ggtggtttccatggtattgatggcatgaaaggggggctgggagagcctggcataggagga cctctaggatctgatggtcaaggagggtttcaaggcaaccagggtacgaagggatggcct gggatccccggagaatcaggcacaaatggacggccaggcttcccaggacagagaggtttt cctggactgaagggtatattgggactggatggactgaagggtgagaagggcatccctgga cttccaggtcaggataacttgggaaccccaggtgttcctggtgctaagggaacgaggggt gagacaggtatacccaactcagaggtcgggaccccaggatcgctgggtttgaagggcgtt caaggacaaccaggtgaccagggccaggtgggacccccagggtttcagggcccccaagga ccacagggcacctcagacaaacctggaccatcaggagaccctggcttccctggacccaaa gggctgccaggtttccctgggccccgtggatatcctggtgagccctctccatacggagag aagggtttagctggccactatggcttccctggattctctggtctgaaaggaaagcagggg gatcagggaccatcaggctacaaaggacagagtggagtgtctgggaagaaaggtgtgaag ggagagcaagggatgatgggaattcctggtaggtttggtttccaaggagaccgaggtcct tctggcccaaaaggaaatactggactcataggttacccgggagccccaggtaaccagggc ccagccccagtcccccccaggatgccaggagaaaggggtgctccagggcctcagggcatc cgaggaccagagggggtacgaggggagactggcccgaaaggaccccctggagctccaggc tacctgggcccccaggggcagaaggggatgccaggggtgggtggcagaccgggtacccct gggtatcgtggaaatgacggagggaggggacatcttggtcttcagggcatggaaggacac cgtggtaacccaggtactacagggttgcctggcatgcctggacgcagtgtgagtgtggga tatctgctggtgaagcacagccaatcagagcagacccccatgtgccccgtgggcatgtcc aagctgtgggatggctatagtctactgtacttcgagggccaggagaaggcccacaaccag gacctaggtctggcaggctcctgcctccctcgtttcaacaccatgcccttcctgtactgc aaccccggagacgtctgctactatgccagccgcaatgacaagtcctattggctgtccacc accgcaccccttcccatgatgcccgtggaagaggaagagatcaaaccctacatcagccgc tgctctgtgtgcgaggctccgtccgtcgccatcgccgtgcacagccaggacatcaccatc ccacaatgccctgtgggctggcgcagcctgtggattggctactccttccttatgcacaca gcagcaggtgacgagggcggtggtcagtctctgtcgtcccctggttcctgtctggaggac ttccgcaccactcccttcatcgagtgtaacggggccaagggcacctgccattacttcgcc aacaaacacagcttctggctcacctccatcgaacagtccttccaggcagagcctgcctcc gagaccctgaaagcaggccagttcctctcacgcatcagccgctgtcaggtctgcatgaag aacctgtga

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