Oncorhynchus nerka (sockeye salmon): 115126848
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Entry
115126848 CDS
T07952
Name
(RefSeq) thrombospondin-4-B-like
KO
K04659
thrombospondin 2/3/4/5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04145
Phagosome
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115126848
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115126848
09144 Cellular community - eukaryotes
04510 Focal adhesion
115126848
09142 Cell motility
04820 Cytoskeleton in muscle cells
115126848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115126848
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115126848
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115126848
Membrane trafficking [BR:
one04131
]
Endocytosis
Phagocytosis
Opsonins
115126848
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115126848
Exosomal proteins of colorectal cancer cells
115126848
Exosomal proteins of bladder cancer cells
115126848
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115126848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
cEGF
EGF
EGF_MSP1_1
DUF7630
KASH_CCD
Motif
Other DBs
NCBI-GeneID:
115126848
NCBI-ProteinID:
XP_029512347
LinkDB
All DBs
Position
LG4:30939901..30960541
Genome browser
AA seq
937 aa
AA seq
DB search
MGLWTMLIVASQLILNLCSDGAQGSVYDLLNSPDCLPDLLQGGLVEQGVNEAFILTTFKL
QPKTGTTVFGLYNPRDNSKYFEFTVLGKLNRAVLRYLRRDRRMSSVTFNNIQLADGQRHR
LLFHLKGMQQGPGAVELHLDCRLVETVRDLPSVFQGLPAGYGVVELKSMQGKAEEELEEL
KLVVGDTFENVASLQNCHQQGDSVQTLGVNTKQLSNQMLELTQVINELKDVLIQQVKETS
FLRNTISECQACGLGGSEVIEPKCAPGVCFRDDMCIETEEGVECGPCPDGYTGDGFSCDD
VDECQFNPCFAGVKCVNTAPGFRCDACPLGYTGLAVEGVGVVYAQTNKQVCDDIDECKGP
NNGGCTADSLCHNSAGSYVCGGCKTGYIGGQVKGCKPERSCGNSRTNPCDINAQCIQERD
GSITCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDMVCKKDNCMRVPNSGQEDADEDGQ
GDACDDDADGDGILNEQDNCWLKPNVDQRNSDKDNHGDACDNCRTVENPDQRDTDGDRKG
DACDDDMDGDGLKNFLDNCQMVVNRDQLDRDGDGVGDACDSCPDIPNPNQSDIDDDLVGD
SCDTNQDSDGDGHQDTKDNCPNVINSSQLDTDKDGLGDECDDDDDNDSIPDFLPPGPDNC
RLVPNPDQLDENNDGVGDVCESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDPEGD
AQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIFGYQ
DSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKSGPGEHLRNSLWHTGDTNDQV
RLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGRLGV
FCFSQENIIWSNLKYRCNDTIPEDFQFSTQHGVNDSL
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggggctgtggacgatgctgatcgtggcttcgcagctgatcttaaacctgtgctcagac
ggagcccagggatcagtctatgatctcctaaactccccggactgtctgccagacctgctg
cagggcggcctggtggagcagggggtgaatgaggcgttcatcctcaccacctttaaactg
cagcccaagactggcaccaccgtgtttggtctgtacaacccccgggacaacagcaagtac
tttgagttcaccgtgctggggaaactcaacagagctgtgctgcgttacctgaggagggat
cggaggatgagctctgtgaccttcaacaacatccaactggcggacggtcagcgccaccgc
ctcctcttccacctgaaggggatgcagcagggcccaggggcggtggagctgcacctggac
tgcagactggtggagacggtcagggatctcccctccgtgtttcagggcctgcctgcaggc
tacggcgtggtggagctgaaaagcatgcagggaaaagcagaggaggagctggaggaattg
aaactggtggtgggagacacgttcgagaacgtagcctctctacaaaactgccaccaacaa
ggagactcggtgcagactctgggggtcaacacaaagcaactctccaatcaaatgcttgag
ctcacccaggtgataaatgagctgaaagatgtccttattcagcaggtcaaggagacatct
tttctcagaaacaccatctctgaatgccaggcttgtggactgggtggaagcgaggtcatt
gagccaaagtgtgcccctggtgtttgtttccgtgacgacatgtgtattgagacggaggag
ggtgttgagtgtggaccctgtcctgatggatacacaggggatggcttcagctgtgatgat
gtggatgagtgtcagtttaacccttgcttcgccggggtaaagtgtgtgaacacagctcca
gggtttcgctgtgacgcatgtcctctgggctacactggtctggctgtggaaggggtggga
gtggtctacgcccagacaaacaaacaggtctgtgacgacattgatgagtgcaaaggaccc
aacaacggagggtgcactgctgactctctctgtcacaactctgcgggttcatatgtctgt
gggggctgtaaaacaggctacatagggggccaggtgaagggctgtaagccagagaggagc
tgtggtaacagtcggaccaacccctgtgatatcaacgcccagtgtatccaagaaagagac
ggctccatcacctgtcagtgtgggattggctgggctggtaatggctacctatgtgggaag
gacacagacattgatggataccctgatgagaaactcaagtgcaaggatatggtctgtaaa
aaggataactgcatgcgtgttcccaactctggccaagaagatgctgacgaggacggacaa
ggggacgcttgtgacgatgacgctgatggagacggtattctgaatgaacaggataactgc
tggctgaagcctaacgtggaccagaggaatagtgacaaggacaaccacggtgatgcctgt
gacaactgtcgtacggtggagaaccccgatcagagggacactgacggtgacaggaaagga
gacgcctgcgatgatgacatggatggagacggcttgaagaacttcctggacaactgccag
atggtggtgaaccgggaccagttggaccgggatggagacggagtgggagatgcctgtgac
agctgccccgatattcctaatcctaaccagtccgacatcgatgatgacctggttggggat
tcttgtgacacaaaccaagacagtgatggtgacggtcaccaggacaccaaggacaactgt
cccaacgtgatcaacagctcccagctggacacagacaaagacggcctgggggatgagtgt
gacgatgacgatgacaacgacagcatccctgacttcctgccaccaggacccgacaactgc
agactggtgcccaaccctgaccagctggatgagaacaatgacggtgttggggatgtgtgt
gagtcagactttgaccaggacaaggtgattgacagaatagacaactgtccagagaacgct
gaggtcactctgacagacttcagagcctatcagacggtggtgctggaccccgagggtgac
gcccagattgaccccaactgggttgtcctcaatcagggaatggagattgtgcagaccatg
aacagtgaccctggactggcagtgggttacactgcgttcagtggggtggactttgagggg
acgttccatgtaaacacggtgacggacgatgactacgcaggcttcatctttggctaccag
gactcctcctccttctacgtggtcatgtggaaacagactgagcagacctactggcaggcc
acacccttcagagcagtggccgagcctggcatccagctcaaggctgtgaagtctaagtca
gggccaggtgagcacctgaggaactccctttggcacacaggggacaccaacgaccaggtg
cgtctgctgtggaaggaccccaggaacgtgggctggaaggacaaggtttcctaccgctgg
tacctgcagcaccggccccaggttggatacatcagggcccgtttctatgaaggtacagaa
ctggtggctgactctggtgtgaccattgacaccaccatgagaggagggcgactgggcgtt
ttctgtttctctcaggaaaacatcatctggtccaacctaaagtaccgctgcaatgacacc
atccctgaggacttccagttcagcacgcagcacggcgtcaacgacagtctctaa
DBGET
integrated database retrieval system
