Oncorhynchus nerka (sockeye salmon): 115127012
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Entry
115127012 CDS
T07952
Name
(RefSeq) adenomatous polyposis coli protein-like
KO
K02085
adenomatosis polyposis coli protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04310
Wnt signaling pathway
one04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
115127012
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
115127012
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115127012
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115127012
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
one04812
]
115127012
Protein phosphatases and associated proteins [BR:
one01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115127012
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
115127012
Cytoskeleton proteins [BR:
one04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
EB / APC
115127012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm_APC_u3
APC_basic
APC_r
EB1_binding
APC_rep
APC_u5
APC_u9
APC_N_CC
SAMP
Arm
APC_u14
APC_15aa
Suppressor_APC
APC_u13
APC_u15
ARM_ARMC5
Sec7-like_HUS
DUF5399
Motif
Other DBs
NCBI-GeneID:
115127012
NCBI-ProteinID:
XP_029512514
LinkDB
All DBs
Position
LG4:31334290..31389658
Genome browser
AA seq
2790 aa
AA seq
DB search
MAAASYDQLLKQVEILKMENSNLRQELEDNSNHLTKLETEASNMKEVLKHLQGSIEEETT
DSSEQIHLLERLKKISLDPNSYPGVKLRPKLPSMQGSGSGRSGDSSPSPSHMGSFPRRGV
SNGGRDSAGYLEELEKERSLLMAELEKEEKEKDWYYAQLQNLTKRIDSLPLTENQFSLQT
DMTRRQLEYEARQIRAAMEEQLGTCQDMEKRAQVRVARIQQIEKDMLKLRQHLQSQSAEP
ESKHDQAGQSEGPQASGDSGGPSAGCSQGSSSRLDQDSASEINLGVGSYSVPRRLTSHLG
TKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCIAMRQSGCLPLLIQLLHGNDKDSVL
LGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRVYCETCWEWQESHER
GVDQDKNPMPSPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIGELLQVDCEIYGLT
SDHYSVTLRRYAGMALTNLTFGDVANKATLCSMKGCMRAMVAQLKSESEDLQQVIASVLR
NLSWRADVNSKKTLREVGSVRALMECALEVQKESTLKSVLSALWNLSAHCTENKADICAV
EGALAFLVSTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL
KSHSLTIVSNACGTLWNLSARNAKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL
MANRPAKYKDANIMSPGSSLPSLHVRKQKALIEELDSQHLSETFDNIDNLSPKASHRGKP
SRHKQNVYSDYDGVSRSDGFSPNSVPVRPPYVNTPVLSSPSPRENPRGNIDSVRAERDRS
QDRDRLRGAPGGFPPDHDSKRMQMPATTAAQIAMVMEEVKSIHLLTGLDDRSPESPNQDP
HRNTAAHGHSNVYPYTKPDQSGRPCPMPKLEYRASNDSLNSVNSTDGYGKRGQMKPSVDS
YSEDDEGKCCVYRKYPADLAHKIHNANHMEDDDGEVDTPINYSLKYSDEQLNSGRQSPSQ
NERWARPKHMGEEMKRTDQRSVRSQSPGYPMYTEGNSEGEEKLKYKPRFVQTEMPQGFRS
RNANQQDQSNAGPTQGINKKMNNQTMCQSVDDYSDDKPTNYSERYSEEEQQDDQPTNYSM
KYNEEHHGEPIDYSLKYSDSSSQKSMFSHSKSSSTQSSVKDNLSQDGSTSSVSSIKNAGR
QMQLHPSSAQMRLGPTRPGQKNTISKPPTVNQETLQTYCVEDTPICFSRGSSLSSLSSEE
DEMEGCKRNVNATSNYPTLPISEKESTGGHTQEQHRTESQSSVQYVRMKPPRNSQVHGDG
SRHHKAVEFSSGAKSPSKSGAQTPKSPPEQYVQETPLMFSRCTSVSSLDSFESHSIASSI
QSELCSGMPSGIISPSDLPDSPGQTMPPSRSKTPPPPQNQHPPPMKHKKVPPPPPPRADM
APRHAAVHAAVQKVQVLPDNDTLLHFATESTPEGFSCASSLSALSLDEPYIQKDELKIMP
SVHEDDQGIEAEHENDDTTEPPSQGKRETEKDILDDSDDDDIEILEACINSAMPTKSSRK
LKKQSPSNTTSRIPPPTARKPSQLPVYKLHPSQTRGQQKTVNFSHGEDMPRIYCVEGTPI
NFSTATSLSDLTIDSPPNELANAESRAPPRAEISSSQRRDTIPEGKCTEEKDAGVTSSST
QAAGTENEGDDILAECISSAMPKGKIHKSFRVQKMFDQPLHPSASPVSLVQQEVEKKPTS
PVKPMPQSSEYRARMIKKPQPPFNFSSYPDKNKETKMQQTKMASRDFTDKPPNAERPRPG
FAFDSPQHYTPIEGTPYCFSRNDSLSSLDFEDEEPNLAKEKAELRKDKDQRKASTKDCGK
PSLRANRANLPQTAPTKPQQQKQAIFPQASKENMGPGPDEKQKFSIEDTPMCFSRNSSLS
SLSDIDQENNNKDLQPKEEEEEEEEEDVTQVEAPTRPQASGYAPKAFHVEDTPVCFSRNS
SLSSLSIDSEDDLLQECISSAMPKKKKQTARNKEGNDQGDAIEERGMDGILAEEPELTLD
LTDTHSPVSEQALSPDSESFDWKAIQEGANSIVSSLHQAAASLSRQGSSDSDSILSLKSG
ISLGSPFHLPFNSEDNKSASDKGRPRILKPGEKSTLEAKNKEKEEEAAKALKGGKKVYKS
LITGKPRAITETPASLQQRQTAPTVPISRGRTMIHVPGVRSSSPSTSPVQKKPPARGPAS
VSKIPPTQGQSSSNSNRSIKPPAKSDPSPARDQPGSQSGSSKASSRSGSRDSTPSRPAQQ
SLTTRPMQSPGRSSVSPGRNGLGSSNKLSQLPRTASPSTSSTKSSGSGRMSYTSPGRPMG
QQTPPKQTGLTRSTSGIPRSESASKSLSQCGVTGTSKKQDLSRTTSTKSSGSESDRSEKP
ALVRQSTFIKEAPSPTLKRKLEESASFESLSPSSTSQSQTPVSSPSLPDMSLTLPYQGSQ
GSNWKKSPQSQNSSENEDGKPERGGKHDISRSHSESPSRLPNLNRTGTWKREKSKHSSSL
PRVGTWKRTGSSSSILSASSESSEKGKSEDERQPLSPAQRSPHGKDGNPLKGTWRKMKDS
EISQSEGHDSSSIDSNTMATGHQMSPAVSKTEDVWVRIEDCPINSPRSVKSPTANTPPVI
DSVLVKMPSVDLLSSETHPKQSKNESVNARRLGPETNLNLFRSSESLDKKGPDLKPAQSI
IPEAHELPVAERTPFSSSNSSKHSSPSGAVAARVSPFNYTPSPRKSSADSATPPRPSQIP
TPVSVTNSAKKRESKGESAGESGSYIVTSV
NT seq
8373 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagcatcttatgatcagctgctgaagcaagtggagatactgaagatggagaac
tccaaccttcgacaagagcttgaggacaactcaaaccacttgaccaaactggagaccgaa
gcctccaatatgaaggaggtgctgaaacacctacagggaagcattgaagaagagactacc
gattcatctgaacaaatccatctcctagaaagactgaagaaaattagcctggatcctaac
agttacccaggggtgaagctaagacctaagctgccctccatgcagggctcaggctctggg
cggtcaggggacagcagccccagtcctagccatatgggctccttccccaggagaggggtg
tccaatgggggccgagacagtgctggctacctggaagagctagagaaggagaggtcttta
ctgatggcggagctggaaaaagaggagaaggagaaagactggtattacgcacagctgcag
aacctcaccaagaggatcgacagcctgccactgactgagaatcaattctccctgcagact
gatatgacccgtaggcaactggagtatgaggcgaggcaaatccgagccgccatggaggaa
cagctgggaacctgccaggatatggagaagagggcacaggtgagggtggctcgcattcag
cagattgagaaggacatgctgaagctccgacagcacttacagtcccagtctgcagaacca
gagagcaagcacgaccaggctggccagagtgaaggaccccaggcttcaggggacagtggg
gggccaagtgctgggtgttctcagggttcaagcagtcgcctggatcaggattctgccagt
gaaataaatttgggtgtgggtagttactctgtgccccgccgactgaccagtcacctgggc
accaaggtggagatggtatattcccttctttcaatgctggggacccacgataaagatgac
atgtctcgcactctgcttgccatgtccagctctcaggacagctgcatcgccatgcgtcag
tctggctgccttcccttactcatccagctcctccacggcaacgacaaggactctgtgctg
ctggggaactcaaggggaagcaaggaggcccgggcgagagccagcgccgcccttcataac
attatccactcccagcctgatgataagaggggtcgcagggagatcagagtgctgcacctc
ctggagcagatcagggtctactgtgagacctgctgggagtggcaggaaagccatgagaga
ggagtggaccaggacaagaaccccatgccctctcccgtggagcatcagatctgcccagcg
gtgtgtgttcttatgaagctgtccttcgacgaagagcacaggcatgctatgaatgagctc
gggggcctgcaggctataggggagctgctccaagtggactgtgaaatctatggcctcacc
agcgaccactacagcgtcactctgaggagatacgccggcatggccctcaccaacctcacc
tttggggatgttgccaataaggcaacactgtgttccatgaagggatgcatgagggccatg
gtggctcagctgaagtctgagagtgaggatctacagcaggtgattgccagtgtgttgagg
aacctgtcctggcgtgcagatgtgaacagtaagaagaccctccgcgaggtgggcagcgtc
agggctctgatggagtgtgccttggaggtacagaaggagtctactctgaagagtgtcctc
agtgccctgtggaacctgtcagctcactgcactgagaacaaagctgacatctgtgctgtt
gagggggctttagccttcctggttagcactctgacgtaccgaagccaaaccaacaccctt
gccatcattgaaagtggaggaggcatcttacgcaacgtgtctagtctcattgctacaaat
gaagatcacaggcaaatcctgagagagaacaactgtcttcagacactcctgcagcatctg
aagtctcacagcctgactattgtgagcaacgcgtgcggcacgctgtggaacctctctgcc
cgcaacgcaaaggaccaggaggccttgtgggacatgggtgctgtgagcatgctgaagaac
ctcatccactccaagcacaagatgatcgccatgggcagcgccgcagcactgaggaacctc
atggccaacaggcctgccaaatacaaggacgccaacatcatgtcgcctggatccagcctg
ccctctcttcacgtcaggaaacagaaagccttgatcgaggaactggactctcagcacctc
tctgagacatttgacaacattgacaatttaagccccaaggcgtcccacaggggtaaacca
agcaggcacaagcagaatgtctacagtgattacgatggtgtttctagatcggacgggttt
agccccaacagtgtgcctgtgcgccccccttacgtgaacacaccagttctgtcaagcccg
tcacccagagagaacccaaggggaaacatagacagtgttagggctgagagggatcgaagc
caggacagagacagactgaggggtgcacccgggggtttccccccagatcatgactctaag
agaatgcagatgcctgccacaacagctgctcagatcgccatggtgatggaggaggtgaaa
agcattcacttgctgactggtctggatgatcggtcaccagagagccctaatcaagaccct
caccgtaacactgcagcacatggtcattcaaatgtatacccctacactaagcccgatcag
tcgggcagaccttgtccaatgcccaagttagaatacagggcgtcaaatgacagtctcaac
agtgtcaacagcactgacggctatggcaaaagaggccagatgaagccatctgtggactct
tactctgaggatgatgaggggaagtgttgcgtctatagaaaatatcctgcagacctcgct
cacaagatccacaatgcaaaccacatggaagatgatgatggagaagttgacacacccatc
aattacagcctgaagtattctgatgagcagctgaactctggtcggcaaagtccaagccaa
aatgaaaggtgggcgaggcctaagcacatgggggaggagatgaaacggacagatcagagg
tctgtgcgatctcaaagcccaggctaccccatgtacacagagggcaatagtgagggcgag
gaaaaactcaagtacaagcccaggttcgtgcaaaccgaaatgccacagggattcagatca
aggaacgccaatcaacaagatcaaagcaatgctggccccactcaaggaattaacaaaaag
atgaataaccagactatgtgccagtctgtggatgattacagtgatgacaaaccaaccaat
tatagtgagcgatactcagaggaagaacaacaagatgaccagccgaccaattacagcatg
aagtacaacgaggaacatcatggagaacccattgattacagtctgaaatactcagactcc
tcctcccaaaaatccatgtttagtcattcaaagtcatcctccactcagagctcagtgaaa
gacaatctgagccaagatggttccacatcatccgtgtcatccataaagaatgcaggaaga
caaatgcagctacatccctcctcggctcaaatgagattagggccaactcggccaggccag
aagaacacaatatccaaaccccctaccgtcaatcaagagacactacagacgtactgtgtt
gaggacacacccatctgtttctcaaggggtagctctctgtcatccttgtcctcagaggag
gacgaaatggagggctgcaagaggaacgtaaatgctactagtaactacccaactcttccc
atctctgagaaagagtccactggtggtcacacacaagaacaacacagaactgagagccag
tcgtctgtgcagtatgtccgaatgaagcctccaagaaatagtcaagttcatggagatgga
tccagacatcacaaagctgttgagttttcatctggagccaaatccccatccaaaagtggc
gcccagacccccaaaagccctccagaacagtatgtgcaggagacacccctcatgttcagt
agatgcacatctgtaagctctctcgacagctttgagagccattccatcgctagctctata
cagagtgaattgtgtagcggtatgcccagtggaatcattagtccaagcgatctgcccgac
agccctggtcagaccatgcctccgagtcgaagcaaaactccaccacccccacaaaatcaa
catccacccccaatgaaacacaaaaaggtgccacctccgccgcctccgagggcggatatg
gctccaagacatgctgcggtacatgctgctgtccagaaagtccaggtgcttccggataat
gacaccctcctacactttgcgacagagagtaccccagaaggattctcttgtgcatctagc
ctcagtgctttaagcttagatgaaccttacattcagaaagatgagctcaagatcatgcct
tctgttcatgaagacgaccagggaattgaggctgagcatgagaatgatgacactacagaa
cccccaagccaagggaagcgtgagacggaaaaagacattctggatgattcagatgatgac
gatatagaaatactggaggcttgcataaactcagccatgccaacaaagtcatcaagaaaa
ctcaaaaagcaatccccttccaacactacttctagaataccaccacctactgcccgtaaa
ccaagccaacttcctgtgtacaaattacacccttcacaaaccagaggacaacagaagacc
gtgaacttttcccatggagaggacatgcctaggatttactgtgtagagggaacccctatc
aatttctcaacagccacatctctcagcgacctaaccattgattcaccccctaatgagctg
gccaatgctgaaagccgtgctcctcctcgtgcagaaatatcatccagtcaaagaagggac
actattccagaaggtaaatgtacagaggaaaaagatgcaggtgttacttcttcctccaca
caagctgccgggacagaaaatgaaggggatgatattttagcagagtgtatcagttcagcc
atgccaaaaggtaaaatccacaaatcctttagagtacagaaaatgtttgatcaaccactg
cacccgtcagcttctcctgttagcctagtccagcaggaggttgaaaagaagcccacttcc
cctgttaaaccaatgccacagagtagtgagtacagagctaggatgattaagaaaccccag
cctccattcaacttttcttcataccctgataaaaacaaagaaaccaaaatgcaacagaca
aaaatggcatccagagatttcacagataagccaccaaatgcggagaggccacggccaggg
tttgcttttgactctccacagcattacacaccaatagagggtacaccctattgcttctca
cgcaatgattcactgagttcattggactttgaggatgaggaacctaacctcgccaaggaa
aaggcagaactcagaaaagacaaagaccagagaaaagcttcaacaaaagactgtggaaag
ccatcgttaagagcaaacagggcaaatctaccacagactgctccaacaaaacctcagcaa
cagaagcaggcaatatttccacaagcatccaaagaaaacatggggccagggccagatgag
aagcagaagttttccattgaagacacaccgatgtgtttctctagaaactcatctctcagc
tctttaagtgacattgaccaagagaacaacaacaaagacctccagccaaaagaagaagaa
gaagaagaagaagaggaggatgtaactcaggtggaagctcctacaagaccccaagcctct
ggttacgcaccaaaagcctttcatgttgaagatacccctgtgtgtttttcaagaaacagt
tcactcagctcactaagcattgactcagaagatgaccttctacaagagtgcatcagttca
gccatgccaaaaaagaagaaacagacagcgagaaataaagaggggaatgaccaaggagat
gccattgaggagagaggtatggatggcattttagctgaggagccagaactcacattagat
ctcactgatacacatagtccagtttctgaacaagccttatcgccagactctgagtctttt
gattggaaggctatccaagagggtgccaattccatcgtcagtagtttgcaccaggcagct
gctagtctctctagacaaggctcatctgactctgactcaatcctctccctcaaatctgga
atatcccttgggtctccctttcatttacccttcaattcagaggataataaatctgcatct
gacaaaggacgcccacggatattaaaacctggtgaaaagagcactttagaagcaaaaaat
aaagaaaaggaagaggaggcagcaaaagctcttaaagggggcaagaaagtctacaaaagt
ctcataacaggaaaaccacgtgcaatcactgagaccccagcctcattacagcagaggcag
acggcccctactgttccaatctctcgtggtaggacaatgatccatgtccctggtgttaga
agcagttctccaagcactagcccagtccaaaagaagcctccagcccgcggtccagcctca
gtctcaaaaattccccctacccaagggcagagctccagtaattcaaacagaagcattaaa
ccacctgctaaatctgaccctagtcccgccagggatcagcctggatctcaatcgggatca
agtaaagcttcatcacgatctggatccagagactccacaccatccaggccagctcagcag
tccttgaccaccagacccatgcagtcacctggtcgctcctctgtgtcacctggaagaaat
ggtctgggctcctcaaacaaattatcccaactgcctcgcactgcttctccaagcacatcg
tcaaccaagtcttctggttctggcaggatgtcctacacctcccctggaagaccgatgggt
cagcaaacgccacccaagcagactggcttgactagaagcactagcggaatccctaggagt
gaatctgcctcaaagagcctgagtcagtgtggagttactggcacatctaagaagcaagat
ttgtccaggacgacatccacaaagtcaagtggaagtgagtcagaccggtcggagaaacct
gccctagttcgccagtcaacgttcatcaaagaggcccctagtccaacactgaagaggaaa
ttggaagagtctgcctcgtttgagtctctgtccccctcctctaccagccagtctcaaacg
cctgtgtcaagcccgtctttgccagatatgtcgttgactctgccctatcaaggaagtcag
ggaagcaactggaaaaagtccccccagagtcaaaactcttcagaaaatgaggatgggaaa
cctgaaaggggagggaaacacgacatctccagatcccattcagaaagcccctccagactc
cctaatcttaacaggacagggacatggaagagggagaaaagcaaacactcctcctctctt
ccaagggttggcacctggaagagaactggcagctcctcgtccatcctctctgcctcctct
gagtcaagtgaaaagggcaaaagtgaggatgaacgacagccactgagtccagcccaaagg
tccccacacggcaaagatggaaaccctttaaaaggaacatggaggaagatgaaggacagt
gaaatatctcagtcagaaggccacgattcttcctccatagactctaacaccatggccacg
gggcaccaaatgagccctgcagtgtccaagactgaggatgtgtgggtgaggattgaggac
tgtcccatcaacagtccgaggtctgtaaaatctccaacagcaaacacacctccagtaatc
gacagtgttctagtcaaaatgccctctgttgatctcttgtcaagtgaaacccatcccaaa
cagtccaaaaatgaaagtgtaaatgctcgtaggctaggtccagagactaatttaaacttg
tttaggagcagtgagagtcttgataagaaagggccagacctcaagcctgctcagagcatc
atcccagaggcccatgaactgcctgttgctgaacgcaccccttttagctcctccaactct
agcaaacacagctcacctagtggtgcagtggctgccagggtcagccctttcaattacact
cctagccccaggaagagcagtgccgacagtgccacaccaccacgaccctcacagataccc
acgcctgtcagcgtcaccaacagtgcaaaaaagagagaatctaaaggagaaagtgctgga
gaaagtgggtcatacattgtaacctcagtttaa
DBGET
integrated database retrieval system
