Oncorhynchus nerka (sockeye salmon): 115127087
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Entry
115127087 CDS
T07952
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115127087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115127087
03041 Spliceosome [BR:
one03041
]
115127087
03009 Ribosome biogenesis [BR:
one03009
]
115127087
03016 Transfer RNA biogenesis [BR:
one03016
]
115127087
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115127087
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115127087
Spliceosome [BR:
one03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115127087
Complex C
U4/U6.U5 tri-SnRNP related factors
115127087
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
Pre-60S particles
Helicases
115127087
Transfer RNA biogenesis [BR:
one03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115127087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
115127087
NCBI-ProteinID:
XP_029512587
LinkDB
All DBs
Position
LG4:complement(32346598..32395392)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTTSTKKKLAVPEKGKSTSKNGKGGKAEFYAAKSKREADNNGTD
EVVFGKRSKLETVSTEEINLADCMPKVRVEPVETVEGCNHEVALPANEEYKQLKPRVGKA
AKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHRQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDTGGSSGGGKWDPKGRKG
GTRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNN
AIDCLSDDDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTNARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMA
KLEEMYNAIEIPNEESVVTYYKIRQQLAKLSKEIEDFIHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFSKKSNVKAITGDADPLYVVEVLVHCSKESVKNTTTEAAKPAAAGEKGEM
QVVPVMLHLLTSISSVRLYSPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYSHPMHSDPSLEAVYSLCERKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSAEQVT
ALLSVFIFQENVNEMPKLTEQLAGPLRQMQECAKRVAKVSAEAKLEVDEDTYLDKFKPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgcctttggtgacgatttgttcagcgtgtttgatgaagaacaaacaacttca
actaaaaagaaactagcggtacctgaaaaggggaaatcgaccagtaaaaatggcaaagga
ggaaaggctgagttctatgcagccaagagtaagcgggaagcagacaacaacgggacagat
gaggtggtttttgggaagaggtccaagctggagactgtttctacagaggagatcaatctt
gctgactgcatgcccaaggtgagggtggagccggttgagacagtggaaggatgcaaccac
gaggtggccctaccagctaatgaggagtacaaacagcttaagcctcgtgtggggaaagca
gccaaggagtaccccttcgttctggatcccttccaacgtgaggccattctgtgtatcgat
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagctctgagggagaagcagagggtcatcttcaccagccccatcaaa
gccctgagtaaccagaagtacagagagatgtacgaagagttccaggatgttggcctgatg
accggtgatgtcaccatcaaccccaccgcctcctgccttatcatgactaccgaaatcctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgggtcatctttgat
gagatccattacatgagagatgccgagcgtggcgtggtgtgggaggagaccatcatcctg
cttcctgacaacgtccactatgtcttcctgtccgccaccatcccaaacgccaagcagttc
gctgaatggatctgccacctccacagacagccctgtcacgtggtgtacactgacttccgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagggaggacaacttcaacacggccatgcaggtgctgagagac
actggtgacactggaggcagtagcggagggggaaaatgggaccccaaggggcgcaaagga
gggacacgagggccatccaacgtgtttaagattgttaaaatgatcatggagcggaacttc
cagccggtcatcatctttagcttcagcaagaaggagtgtgaggcctacgccctgcaggtg
tccaagctcgacttcaacacagatgaagagaagaagctggtggaggaggtgttcaacaat
gccatagactgtctgtcagacgatgacaagaagctgccccaggtggagcacgtcctgcct
ctattgaagagaggtatagggattcatcatggaggactgctccccatcctaaaggaaacc
atcgagatcctgttctctgaggggcttctcaaggccttgttcgccacagagacctttgcc
atgggcatcaacatgcccgcccgcactgtcctgttcaccaacgcacgcaagtttgatggc
aaagacttccgctggatcacgtctggtgagtacatccagatgtccggtcgagctggcagg
agagggatggatgagaggggtatcgtcatcttcatggtggatgagaagatgagccctgca
attgggaaacagctgcttaagggctcggcagaccctctgaacagtgccttccacctcacc
tacaacatggttctcaacttgctgcgggtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggggtcgtagagaagatggcg
aagctggaagagatgtacaacgccatagagatccccaacgaggagagtgtggtgacctac
tataagatccgccaacaactggccaaactgagcaaggagatagaagacttcatccacaaa
ccaaaatactgtcttcccttcctccagcctggcagactagtcaaggtcaaaaacgaagat
gctgactttgggtggggtgtggttgttaatttctcgaagaagtcaaatgtcaaggccata
acgggtgacgcagaccctctatacgtggtagaggtgctggtccactgcagtaaggagagt
gtgaagaacaccaccacagaggctgccaaacccgctgccgctggggagaagggggaaatg
caggtggttcctgtgatgctccacctcctgacctccatcagttcagttcgtctctacagc
cccaaagacctgcggccttatgacaacagacagagcatgctcaaatccatacaggaggtg
cagaagaggttcccggacggcgttccccttctggaccccatcgatgacatgggcattaag
gacccgggcctgaagaaggtcatccagaaggtggaggcgtttgaacacaggatgtactcc
caccccatgcactctgaccctagcctggaggcagtctactccctctgcgagaggaaagcc
ctgattgcgggggatatcaaaggggccaagcgggagctgaagaaggctcgaaccgtgctg
cagatggacgagctcaagtgcaggaagcgcgtcctgaggcgtctcgggtttgcgacttcc
tcggatgtcatcgaaatgaagggccgagtggcctgcgagatcagcagtgctgatgagctt
ctactgactgagatggtgttcaacggcctgttcaacgatctgtctgcagaacaggttacc
gctctactcagcgtcttcatcttccaggagaacgttaacgagatgcccaagctgacagag
cagctggctggacctctgagacagatgcaggagtgtgccaagcgcgttgccaaggtgtct
gcggaggctaagctggaggtggatgaggacacctacctggacaagttcaagcctcacctg
atggacgtggtttacacctgggctaacggctccaccttcgcacagatctgcaagatgacc
gacgtctttgaagggagtatcatccgctgcatgcgtcgcctggaggagctgctccgtcag
atgtgtcaagcagccaaggccatcggtaacaccgagctggagaacaagtttgcggagggt
attacgaaaatcaagagggatattgtgtttgctgccagtttatatttgtga
DBGET
integrated database retrieval system
