Oncorhynchus nerka (sockeye salmon): 115127528
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Entry
115127528 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-9-like
KO
K16498
protocadherin delta 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
115127528
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115127528
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115127528
Protein phosphatases and associated proteins [BR:
one01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115127528
Cell adhesion molecules [BR:
one04515
]
Cadherins
Protocadherins
115127528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
DUF6377
7tm_3
MAP17
EphA2_TM
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
115127528
NCBI-ProteinID:
XP_029513003
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MDLTDFYLLAALVACFWMDPSIAQELIYPIREELQENVLIGNIPKDLNVSHTNAATGASA
NLVYRLVSKAGDNPLLRVQSSTGEIFTTSNRIDRERLCPGPSFEENECSFEIEVVILPND
YFRLIKIKIVVKDTNDNAPMFPSPVINISIPENTLINSRFAIPSATDPDTGPNSVHKYQL
VNGQSAFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGVPQKSSTAILQVT
VTDVNDNKPVFRENQIEVHIPENSPIGTSVVQLQATDADVGANAEIKYMFGTQVSQLXKR
LFALNGTTGLITVQRPLDREETAIHKLSVLASDGSSSPARATVVINVTDVNDNPPNIDLR
YIISPINGTVFLSEKDPINTKIALITVSDKDTDVNGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDFEGTKEYNFKIIASDSGKPSLNQTALVRVRLEDENDNSPIFSHPVIELAVMEN
NKRDLFLTTLSATDEDSGRNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREDQDRFLFT
VTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDSDA
GENAAVTLSILSDNENFILDPYSGVIKSNVSFDREQQSSYTFDVRAVDSGRSPCSSAAKV
TINVIDVNDNTPIVIYPPSNTSFKLVPLSSIPGSVVAEVFAVDGDTGMNAELKYTIVSGN
TKGLFRIDPVTGNITLEEKPAISDIGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTVSNA
TFIYDLIRRTMETPLDRNIGESSETYQSGDYLTIMIAIVAGAMVVIVVIFVTVLVRCRHT
SRFKAAQRKKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEENKPDDPAHEPIN
GNISLPAELEEPGHFDWNAAPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSVKKHHM
IQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGSVHPSRQVKDNFYWSIS
TAYNCPVQQC
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggatctaacagacttttacttgttggctgctctcgttgcctgtttttggatggaccct
tctatagcccaggaactgatctatcctattagagaggaactgcaggaaaacgttctcatt
ggaaacataccaaaggacctgaacgtctcccatacaaacgctgctaccggagctagcgct
aacctggtctacaggctggtgtctaaagccggcgacaaccctctgctcagagtgcagagc
agcacgggagagatatttaccacctccaatcgcatcgacagggagaggctctgtcccggc
ccctcgttcgaggagaacgaatgctccttcgagatcgaggtggtgattttaccaaacgac
tatttcagattgataaagattaagatcgtagtcaaggacaccaacgacaacgctcccatg
ttcccgtctcccgtcatcaacatctccatcccggagaatacgctgatcaacagtcgtttc
gccatcccctccgccaccgaccccgacaccggccccaacagtgtacacaagtaccagctg
gtaaacgggcaaagcgccttcggcttggacatcgtagagacgcccgagggggagaagtgg
ccgcagctcatcgttcagcagaacctggacagggaacagaaggacacgtacgtcatgaag
atcaaggtggaggacggcggcgtgccacagaaatccagcaccgccatcctccaagtcacc
gtcacagacgttaacgataacaaaccggtgttcagggagaaccagatcgaggtccacata
ccggagaactcgcctatagggacgtccgtagtccagctacaggctacggacgcagacgtc
ggggcgaatgccgaaatcaaatacatgttcgggacgcaggtctcccagctanccaagaga
ctatttgctttaaacggcaccactggtcttataaccgtacagcgacccctcgatagagag
gagaccgccattcacaagttatccgtgttggcgagcgacggcagctccagcccggccaga
gctaccgtagttataaacgtgacagacgtgaacgacaatccgccaaacatcgatctgaga
tatatcatcagtccgataaacggcaccgtgttcctctcggagaaagacccaatcaacacc
aagatagctttgatcaccgtgtcggacaaggacacggacgtcaacggcaaggtcatctgt
ttcatcgagaaggacgtcccctttcacctcaaagcggtgtacgacaaccagtatttacta
gagacgtcggcgctgctcgactttgaggggaccaaagagtacaacttcaaaatcatagcc
tccgactctggcaagccgagcttgaaccagacagcgttggtaagggtgaggctggaggat
gaaaatgacaactctccgatcttcagccatcctgtcatcgagctggccgtcatggagaac
aacaaacgcgatctcttcctcacgactctcagcgccaccgacgaggacagcgggagaaac
gcggagatcgtctaccaactgggccctaacgcttcgttctttgacctggaccgtaaaacc
ggtgtcctcacggcctcccgggtgttcgatcgtgaggaccaggatcggttcctcttcacg
gtaacggcccgagacaacgggacgcctccactccagagccaggcggcagtcatcgtgaca
gtactcgatgaaaacgacaacagccccaagttcacccacaaccacttccagttctttgtg
tcagagaacctgcccaagtacagcacggtgggggtgataaccgtcacagactcagacgcc
ggggaaaatgccgccgtcacgctgtcgatactcagcgacaacgagaactttatcctagac
ccgtactctggagtaataaagtccaacgtgtcctttgaccgggagcagcagagctcctac
accttcgacgtccgggcggtggatagcgggcggtccccatgttcctcggccgccaaggtg
accatcaatgtcatcgacgtaaacgacaacacccccatcgtcatctaccctccttccaac
acctccttcaaactggtccccctctcgtccatccctggatcggtggtggccgaggtcttt
gctgtggacggtgacacagggatgaacgcagagctcaagtacaccatcgttagcggcaac
accaaaggtctgttccggatcgaccctgtgacaggaaacatcaccctggaggagaagcct
gctatctccgacatcggcctccatcggctggtcgtgaacattagcgacctgggctaccct
aagtccctgcacaccctggtgctggtgttcctctacgtgaacgacacggtcagcaacgcc
acgtttatctacgacctcattcgccgcaccatggagacgcccctggacaggaacatcggg
gagagcagtgagacttaccagagcggagattatctcaccatcatgatcgccatcgtagcc
ggggcgatggtggtgattgtggtgatcttcgtgacagtcctggtgcgctgccgtcacacc
tcgcggttcaaggcggcccagagaaagaagcagggcgctgagtggatgtctcccaaccag
gagaacaagcagaacaagaagaagaagcgtaagaaaaggaagtcgcctaaaagctccctg
ctgaactttgtcaccatcgaggagaacaagccggacgacccggctcatgagcccatcaac
ggcaacatcagcctgcctgccgagctggaggagcccggccactttgactggaacgctgct
cctacgaccaccttcaagccctccagtccagacctggcgcggcactacaagtctgcttct
ccgcagtccgcgttccacctcaaagcggacacgccagtctccgtgaagaaacaccacatg
attcaggagctccctctggacaacaccttcgtagggggctgtgacactctgtccaagaga
tcctccactagttcagaccacttcagtgcctcggagtgcagttcccagggaggattcaag
actaagggatccgtacacccgtccagacaggtaaaagataacttttactggtctattagt
actgcgtataactgcccggtccaacagtgctga
DBGET
integrated database retrieval system
