Oncorhynchus nerka (sockeye salmon): 115128123
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Entry
115128123 CDS
T07952
Name
(RefSeq) neurogenic locus notch homolog protein 1-like
KO
K02599
Notch 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
115128123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
Ank_2
Ank
Notch
NOD
NODP
Ank_3
Ank_4
EGF_2
Ank_5
EGF_3
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
115128123
NCBI-ProteinID:
XP_029513590
LinkDB
All DBs
Position
LG4:complement(35526164..35590708)
Genome browser
AA seq
2488 aa
AA seq
DB search
MYRFFVKLTFLIPVIVITQGLRCSLTTESCLNGGRCEASSDRNGECRCTSDYVGSRCQYS
NPCNPSPCRNGGECRAVSHGNTFEFHCKCRLGFSDQLCLTPTNHACMSSPCRNGGTCDLI
TLSDYRCRCPPGWSGKTCQIANPCASNPCANGGQCSPFESHYICACLPAFHGQTCKLDVN
ECAQMSSPCRNGGMCVNEVGSYHCRCPQEYTGANCETPYMPCNPSPCHSGGTCVQKGDTT
YDCSCLPGFTSQNCDHNIDDCPGHNCQNGGLCVDGVNTYNCQCPPHFTGQFCTENVDECE
MMPNTCQNGGTCHDTYGSFHCVCVNGWTGDDCSENIDDCASAACYHGATCHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPPGYTGSACNQDIDECSLGA
NPCEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECMSNPCQNDATCLDQIGGFHCICMP
GYEGVFCQINTDECASMPCLNNGKCIDRINSFYCECHKGFSGGLCQVDIDECASTPCMNG
AKCTDGPNKYSCECTEGYSGQHCETDINECYSDPCHYGTCKDGLATFTCYCHPGYTGRLC
ETNINECLSQPCQNGGTCQDRENTYICTCPKGTAGFNCEVNLDDCKSKPCDYGRCIDKIN
SYECACEPGYAGAMCNINTDECAINPCHNGGTCIDGINSFTCLCPEGYSDTTCLLQVDEC
GSNPCIHGRCQDLLNGYRCFCDSGWGGPNCDINNNECESNPCMNGGTCKDMTSGYVCSCR
AGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGEMCETLLAPCSPMQPCK
NGGVCHESEDYQSFSCLCPEGWQGQTCEIDINECVKSPCRSGATCHNMVGSYRCSCRPGY
TGQKCETDIDDCKPNPCSNGGLCRDGVDSFVCTCLPGFRGGRCEHDINECESSPCKNGAN
CTDCVNSYTCTCPPGFSGINCENNTPDCTESSCFNGGTCVDGINTFTCLCLPGFTGSYCQ
HDINECDSKPCLNGGTCLDSYGTYKCTCSHGYTGVNCQNLVRWCDSSPCKNGGSCWQQGS
SYTCQCQTGWTGLYCDVPSVSCEVAAKQQGVEVAHLCRNSGQCLDAGNTHYCRCQAGYMG
SYCQEQVDECSPNPCQNGATCTDYLGGYSCECLPGYHGVNCSKEINECLSQPCQHGGTCI
DLINTYKCSCPRGTQGIHCEINLDDCNPSTDPLTNEPKCFNKGQCVDRVGGYHCMCPAGY
VGERCEGDVNECLSDPCDLRGSYNCVQLRNSYRCECRTGYTGQRCDKVFDGCKGRPCRNG
GMCAVASNNPDGFICKCPPGYTGSSCEYDSRFCGSLNCRNGGTCVSGHLSPRCLCPTAFT
GPECQTPTNSPCNVNHCYNGGTCQRTPDAPFFHCSCPNNFNGLLCHILDYSFPGGFGRDI
TPPPEVEVSCEIPQCDEWAGNHICDSLCNNHACGWDGGDCSLNFDDPWQNCSAALQCWRY
FNDGKCDEQCKSPGCLYDGFDCQGQEGQCNPLYDQYCKDHYADGHCDQGCNNAECEWDGL
DCANNMPEKLADGHLVLVVHIPPEQLKNGLSTFLRELSSVLHTNVVFRRDANGEPMVFPY
YGSEQELAKHNVKRSTDSWPDWAVVPANMLGQVKESVGSMVNLPRQRRELDLMQVKGSVV
YLEIDNRQCYQQSTECFQSATDVAAFLGALASSGNLNVPYIEAVTSVQPTPASSELYPMY
VVFLGLAVLGFICLGVLVSRKRRREHGQLWFPEGFKVSEPSKKKRREPVGEDSVGLKPLK
NILDISLMDDSQNGLWGEEEPDSRRFRFEEQAVLDLDDRTDHRQWTQQHLDAADLRIPSI
APTPPQGEIENDCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDPSAEIISDFIYQG
ANLHNQTDRTGETALHLAARYARSDAAKRLLESTADANVQDNMGRTPLHAAVAADAQGVF
QILIRNRATDLDARMHDGTTPLILAARLAVEGMVDELINCHADANAIDDFGKSALHWASA
VNNVDAAMVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLEHFANREITDHLDQLP
RDIAQERMHHDIIRLLDEYNLVRSPGLHNGTLSATNLSPPLCSPNGYLGSLKPTAPGKKV
RKPGSGGKDGGKDMRIRKKKSLDGKGSLLDSSAVLSPVDSLESPHGYLSDVASPPMTSPF
QQSPPMSFNHLQGSGDSHVGQMGMGKGQDMGRMPFDPNPPRLSHLPVSSPGSQGTITMAM
GGAGGRGQCDWHSRIHLGLGQQGGFNQGLPMSHGMMAPLRGVPTATLSRIMGYQGLQTSH
LGTPPHLMQQMHSRQNPQLQHQNSNSTTAGQVLSQSFLSSELSGSDLQQGNGVGRSVPIH
TILPQETQILGTQFLTPPSQHSYSGPIDNTPNHQLQVPDHPFLTPSPGSPDQWSSSSPHS
NMSDWSEGISSPPMSLHSQMGLIPNQFK
NT seq
7467 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttctttgtgaaactaacgtttcttattccagtcatcgtcataacacaaggt
ctaagatgctctctaactactgaatcatgtctgaatggagggaggtgtgaggcctcctct
gacagaaatggagaatgcaggtgtacaagtgactatgtgggtagccgctgccagtactcc
aacccatgcaacccctcgccatgccgcaacggaggcgagtgccgcgccgtatcccacggc
aacacttttgagttccactgcaaatgtcgactgggcttctccgaccagctgtgcctgaca
cctaccaaccatgcctgcatgagttcgccatgtcgcaatggagggacttgtgacctgatc
acgctctccgactaccgctgccgctgcccgcccggatggtcagggaagacatgccagatt
gccaacccctgtgcatccaacccctgtgccaacggtggacaatgctcaccctttgagtcc
cactacatctgcgcatgcctgcccgcctttcatggccagacctgcaagctggacgtcaat
gagtgtgcccagatgtcgtcaccctgtcgcaacgggggcatgtgtgtgaatgaggtgggc
tcctaccactgccgctgcccccaggagtacacgggtgccaactgcgagaccccctacatg
ccctgcaacccctctccctgccacagtgggggcacttgcgtgcagaagggggacaccacc
tatgactgcagctgcctgccaggatttacaagtcagaattgtgatcacaacattgatgac
tgcccaggccacaactgtcagaatggtggcttgtgtgtggatggggtcaacacctacaac
tgccagtgcccccctcactttacaggccagttctgtaccgagaatgtggatgagtgtgag
atgatgccaaacacgtgccaaaacggcggtacgtgccatgacacctatggcagcttccac
tgtgtctgtgtcaatggctggacgggcgatgactgcagtgagaacatcgacgactgtgcc
agcgcagcctgttatcacggcgccacatgccacgaccgcgtagcctccttcttctgcgag
tgtccacatgggcgcacaggtttactgtgtcatcttgatgatgcctgcatcagtaacccg
tgtcagaaaggctcgaactgtgacaccaatcctgtcaacgggaaagccatctgtacctgc
cctccaggttacactggctctgcatgcaaccaggacattgacgagtgttccttaggtgcc
aacccttgcgagcacggtgggcgctgcctgaacactaaaggctcgttccagtgcaagtgt
ctccagggttacgagggcccgcggtgcgagatggatgtcaacgagtgcatgtccaacccc
tgtcagaacgatgccacgtgcctggaccaaattggagggttccactgcatctgcatgcca
ggttatgagggggtgttttgccagatcaacactgacgagtgtgccagcatgccctgtctg
aacaacgggaagtgcatcgacaggatcaactccttctactgcgagtgccacaaaggcttc
tctggtggtctatgtcaggttgacatcgatgagtgtgccagcacgccctgcatgaacgga
gccaagtgtaccgacggccctaacaaatactcatgtgaatgcactgaaggttactctgga
cagcactgtgagactgacatcaacgagtgttactcggacccctgtcactatggcacgtgt
aaggacggcctggccaccttcacctgctactgtcaccctggttacacgggccgcctgtgt
gagaccaacatcaatgagtgtctgagccagccatgtcagaacggaggcacctgtcaggac
agggagaacacttacatctgcacctgccccaagggcactgcaggctttaactgtgaggtg
aatctggatgactgtaagagcaagccctgtgactacgggaggtgcattgacaagatcaac
agctatgagtgtgcatgtgagccaggttacgcaggcgccatgtgcaacatcaataccgat
gagtgtgccatcaacccctgtcacaatggtggcacctgcatcgatggcatcaacagcttc
acatgcctgtgcccagagggctacagtgacaccacctgtctgttgcaggtggacgagtgt
ggcagcaacccctgcatccatggtcgctgccaggatctgctcaatggctacaggtgtttc
tgtgactctggctggggtgggcctaactgtgacatcaacaacaacgagtgtgagtccaac
ccgtgtatgaacggtggcacctgcaaggatatgaccagtggatatgtttgtagctgccga
gccggcttcagtggacctaactgccaaactaacatcaacgagtgtgcctccaacccctgc
ctgaaccagggcacctgcattgacgatgtggccggctacaagtgcaactgcttactgccc
tataccggtgagatgtgtgagacactgctggccccatgcagccccatgcagccctgtaag
aacggtggagtgtgtcatgagtcagaggactaccagagcttctcctgcctctgtccagag
ggatggcaaggtcaaacatgcgagatagatatcaacgaatgtgtgaaaagtccttgccgc
agcggcgccacatgccacaacatggtgggcagctaccgatgcagctgccgtccgggctac
accggccagaagtgtgagacggacatcgacgactgcaagcccaacccctgcagtaatgga
ggtctgtgcagagatggagtggacagctttgtgtgcacttgtctgccagggttccgtggt
ggcaggtgtgagcatgacattaatgagtgcgagagcagcccgtgtaagaatggggccaac
tgcaccgactgtgtcaactcctacacctgcacctgtccacccggtttcagtggcatcaac
tgcgagaataacacccccgactgcacagagagctcttgcttcaacggtggcacctgcgtg
gatggcatcaataccttcacctgcctgtgtctgccaggcttcacaggcagctactgccag
cacgacatcaatgagtgtgactccaagccctgcctcaatggtggcacctgtctggacagc
tacggcacctacaagtgtacctgctctcatggctacactggagtcaactgccagaacctg
gtgcggtggtgtgactcatctccctgtaagaatggaggctcatgttggcagcagggctcc
tcgtacacctgtcagtgtcagacgggatggaccggactctactgtgacgtccccagtgtc
tcctgcgaggtggctgccaaacagcaaggtgtggaggtggctcacctatgtcgtaactca
ggccagtgtctggatgctggcaacacccactactgccgctgccaggcgggctacatgggc
agctactgccaggaacaggtggacgagtgctcccccaacccttgccagaacggtgccacc
tgcacagactacctgggagggtacagttgtgagtgtcttcctgggtaccacggggtgaac
tgctccaaggagatcaacgaatgtctgtctcagccctgtcagcacgggggcacctgcatc
gacctcataaacacctacaaatgctcctgtcccagaggaacacaaggcattcactgtgag
atcaacctggatgactgcaacccctctacagaccctctgaccaatgagcccaagtgtttc
aacaagggtcagtgtgtggacagagtggggggctaccactgcatgtgccccgctggctac
gtaggggagcgctgcgagggtgacgtcaacgagtgcctgtcggacccctgcgacctgcga
ggctcctacaactgtgtccagctccgcaacagctaccgctgcgagtgtcgcactggatac
acaggccagcgctgtgacaaggtgtttgatggctgtaaggggagaccatgtaggaacgga
ggaatgtgtgcagtggccagtaacaaccccgacggattcatctgcaaatgcccaccgggt
tacacaggctcctcctgcgaatacgactcacgcttctgtggtagcctcaactgcagaaat
ggtggcacctgtgtctctggccacctgagccctcgttgcttgtgccccacggcttttacc
ggccctgagtgccagactcccacgaacagcccctgcaacgtcaaccactgctacaacggg
ggcacttgccagagaacccccgatgcacccttcttccactgcagctgcccgaacaacttc
aatggcctgctctgccacatccttgattactcctttcccggtgggttcggccgggacatc
acaccaccacccgaggtagaggtgagctgcgagatcccgcagtgcgacgagtgggcgggc
aaccacatctgtgactcgttgtgcaacaaccacgcctgcggctgggacggtggcgactgc
tcgctcaacttcgatgacccatggcagaactgctcggcagctctgcagtgctggcggtac
ttcaatgacgggaagtgcgacgagcagtgcaaaagccctgggtgtctctacgacggcttc
gactgccagggacaggagggacagtgcaacccgctgtatgaccaatactgtaaggaccac
tacgcggacggccactgcgaccagggctgtaacaacgcagagtgcgagtgggacggcctg
gactgcgccaacaacatgcccgagaagctagctgacggccacctggtccttgtggtccac
atcccccccgagcagctaaaaaatggtttgtccacgttcctccgtgagctcagcagcgtt
ttgcacaccaacgtggtgttccggcgcgacgcaaacggggagcccatggtgttcccctac
tatggcagcgagcaggagctggccaagcacaacgtgaagcgttccaccgacagctggcct
gactgggcggtcgtgccagccaacatgctcggccaggtgaaggagagcgtggggtccatg
gtgaacctgccccgccagcgccgagaattggacctcatgcaggtcaaagggtcggtggta
tacctggagattgataaccgccagtgctaccagcagtccacggaatgcttccagagcgcc
accgacgtcgccgcgttcctgggagcgctggcctccagcgggaacctcaatgttccttac
atcgaggcagtcaccagtgtgcagcccacccctgcatcctctgagctatacccaatgtac
gtggtgttcctggggctggctgtactgggcttcatctgcctgggggtgctggtgtcacgt
aaacgccgacgggagcacggacagctctggttccctgagggcttcaaagtttctgagccc
agcaagaagaaacgcagagagcccgtaggagaggactctgtgggactcaagccactgaag
aacattttggacatttctctgatggacgacagccagaatggattgtggggagaggaggag
ccagactcgagacgctttaggtttgaggagcaggccgtgttggacctagatgaccgcact
gaccacagacagtggacccagcaacacctggacgcggctgacctgcggatcccttccatc
gcccccacgcctccccagggagagatcgagaatgactgcatggacgtcaatgtccgaggc
ccagatggtttcactcctctaatgatcgcttcgtgcagcggaggaggcttggagacgggg
aacagtgaggaggaggaggacccttcggctgagatcatctctgacttcatctaccagggc
gccaacctgcacaaccagacggaccgcacaggcgagaccgctcttcacctggccgcccgc
tacgcccgttccgacgccgccaagcgactgctggagtccaccgccgacgccaatgtccag
gacaacatggggcgcactccactgcatgccgctgtcgctgcagacgcacagggagtcttc
cagattctgatccggaaccgggcaactgatcttgacgcccgcatgcatgatggaacaact
cctctgatcctggctgcccgattggctgtggaaggcatggtggatgagcttatcaactgc
catgctgatgccaacgccatcgatgactttggtaaatctgcccttcattgggcttcagct
gtcaacaacgtggatgctgccatggtgttgttgaagaatggcgccaacaaagacatgcag
aacaataaggaggaaactcctctctttctggcagccagagagggcagttatgagacggcc
aaggtactgctggagcactttgccaaccgtgagatcaccgaccacctggaccagcttccc
cgggacatcgcccaggagcgaatgcaccatgacatcatccgtctgctcgatgaatacaac
ctggtgaggagcccagggctccataatgggaccctgagcgccactaacctgtctcctcct
ctgtgctcccccaacggatacctgggcagcctcaagcccaccgccccgggcaagaaggtc
cgcaagccaggctctggagggaaggatggtggcaaagatatgaggatacggaagaagaag
tccctggacgggaagggcagtctgctggacagctcagccgttctctcgcccgtcgactcc
ctggagtcgccccacgggtacctgtccgacgtggcgtcgccaccaatgacatcgccattc
cagcagtctccgcccatgtcgttcaaccacctgcaaggcagtggagacagccacgtgggt
cagatgggcatgggcaaggggcaggacatggggcgtatgccctttgacccgaaccctccc
cgcctgtcccacctgcctgtttccagccccggcagccagggaaccatcactatggccatg
ggcggagctgggggaagaggacagtgtgattggcactccaggatacacctgggtctcggg
cagcagggtggctttaaccaaggccttcccatgtcccacggtatgatggctcccctccgc
ggggtccccactgccaccctgtcccggatcatgggctaccagggcctgcagaccagccat
ctgggcacgccgccccacctcatgcagcagatgcactcccggcagaacccgcagctccag
caccagaactccaactccaccacggctggccaggtcctgagccagagtttcctgagcagc
gagctgagcggctcggacctgcagcagggtaacggggtgggtcgctcggtccccatccac
accatcctcccccaggagacccagattctcggcacacagttcctcaccccaccctcccag
cacagctattccggcccaatagacaacacacccaatcaccagctgcaggtgcctgaccac
ccctttctaactccctcccccggatcccctgaccaatggtccagctcctctccacattcc
aatatgtctgattggtcagagggcatctccagtcctccaatgagtttgcattctcagatg
ggacttatccctaaccagtttaagtag
DBGET
integrated database retrieval system
