Oncorhynchus nerka (sockeye salmon): 115128338
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Entry
115128338 CDS
T07952
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115128338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115128338
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115128338
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115128338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
115128338
NCBI-ProteinID:
XP_029513963
LinkDB
All DBs
Position
LG4:44074034..44090607
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AA seq
927 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEDRIEELKRFIEKHRYHIRM
LETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSVSP
HPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPATYTTENSEDDKKRG
RSTDSEISQSPVKNGNPSSSLSSSSSSSSSSSSSSASGASSGAASSSLVSMVNITGGGQA
NAVGNNNSLLGNMGGLLSNSGSYSDATQQQLQQHHQTQQARNSILSSSPSNNILLPSPSA
SSPAISSTALTPNTQPQAPSRPSPGSTLGLGLGLGLGKGGMSGSPAVSQMSGLGLSGMPA
SLNTMAGLLAGSTSAPYAMAAAGSGTIGSPLAGKISSLSTSSTNSSAVGPLSGFSDRSTG
LLGSVPGAVGVSGGILGLGSGQSTVQGPPLVSPSPIGGGLAPGSSLGAIGSIGGNSGSGA
PNSLGIGGGNAAIARPPSGQKQNGSTSYSAVVADSTPDSALNIASQLQSSQPSSLLSTTN
QLKDSGPSLLGSMTLPTSTPSPSYIESKPSGSSMLNGPLSYTQASESMKPQEPLSTVKSM
AEQAALGSAMEGELPPLHLTTDIFPSTTAPPGPPSAPQQPSLSEVSIPPSLGVCPLGPVP
LSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHNQVPPPHSDSVEFYQRL
STETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIY
FDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagttacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagac
caaatcaagacgtgggtggcctccaacgagatcaaagacaaaaggcagctagtggagaat
cgcaaactcattgagacgcaaatggagcggttcaagatcgtggaacgagagaccaagaca
aaggcttactcgaaggaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaggaggaggtcggcaattggctaacgaatacgatagacactctgaacatgcaggtggat
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gaggaccgcatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatccggatg
ctggagaccatcctgcgcatgctggacaacgacactttgccggtggactccatccgcaag
atcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgaggagaac
gagttcctctacgacgacctggatctggaggagctccctacctctccctctgtctccccc
catccatctcttgtgtctctagccgggtcgctggtggccacgtccccgccgggccaatcg
ctcctggacgacgatctcttccatcagatctctagcggcacgcctacctccaccacttcc
tcctcgcccattcccgccacgtacactacggagaactctgaagatgacaagaaaagggga
cgttcgacagacagtgaaatcagtcagtcacctgtcaagaatggcaacccctcttcgtcg
ttgtcttcatcgtcctcatcctcctcgtcctcctcttcatcatctgcctctggcgcctcc
tcgggagcagcctcttcctcgctggtctctatggtgaacatcaccggaggtggccaggcc
aacgctgtgggcaacaacaacagccttctgggcaacatgggtggtctcctctccaactct
ggcagctacagcgacgctacccagcagcaacttcagcagcatcaccaaacgcagcaggcc
agaaactcaatcctctcctccagcccgtcgaacaacatccttctccccagcccctctgcc
tcctcgcccgccatctctagcacagccctcacacccaacacccagccgcaggctccgtca
aggccctctccgggctccaccttggggctagggttgggcttgggccttggtaaaggcggc
atgagtgggtcaccggctgtcagccagatgtcgggccttggcctgtcagggatgccggcg
tccttaaacaccatggccggactcctggcgggctccacttcggccccctacgccatggca
gcagcgggctccgggaccataggaagcccccttgcagggaaaatcagcagcctgagcact
agcagcactaactccagcgcagtgggaccgttgagtggattcagcgacaggtccacgggc
cttttgggctctgtgcccggtgcagttggtgtcagtggtgggatcctaggccttggctca
ggacagtcgacagtccagggccctccactggtgtcccccagtcccataggagggggcctg
gcccctggaagcagcctgggagctataggaagcattggagggaactctggatcaggagcg
ccaaacagcttgggcatcggaggaggaaatgcggcgatcgcaaggccacccagtggacag
aagcagaatggtagcactagttacagtgctgtagtagcagacagcacaccagattctgcc
ctcaacattgccagccaattacaaagcagccaaccctcgtctttgctctccaccaccaat
cagcttaaagacagtggccccagccttttagggtccatgaccctacccaccagcactccc
tcgccatcctacattgagagtaaaccttcaggcagcagtatgctcaacgggccgctctcc
tacacacaggcctctgaaagcatgaagccccaggagcctctgagcactgtgaagtccatg
gccgaacaagcggcactgggctcagcaatggagggagagttgccccctctgcacctcacc
acagacattttccccagcactacagcgcctccagggcctccctcggccccccagcagccc
tcgctctcggaggtcagcatccccccatcgctgggtgtgtgcccgctggggcccgtaccc
ctgtccaaagaccagctgtaccagcaggccatgcaggagtcggcctggacgcacatgccc
cacccctccgactcagagcggatcaggcagtacctgatgaggaacccgtgtcccaccctg
cctttccacaaccaggtgccacccccccactccgactctgtggagttctaccagagactg
tccacggagacactgttcttcatattctactacctagagggcaccaaggcccagtatctg
gcagccaaggccttgaagaagcagtcgtggcggttccacaccaagtacatgatgtggttc
cagaggcacgaggagcccaagaccatcacagatgagtttgagcaggggacgtacatttac
ttcgactacgagaagtggggacaacggaagaaggaaggattcacgtttgagtacaggtac
cttgaagaccgagacctccagtga
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