Oncorhynchus nerka (sockeye salmon): 115128386
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Entry
115128386 CDS
T07952
Name
(RefSeq) antigen peptide transporter 2-like
KO
K05654
ATP-binding cassette, subfamily B (MDR/TAP), member 3 [EC:
7.4.2.14
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one02010
ABC transporters
one04145
Phagosome
one05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115128386
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115128386
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115128386
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115128386
Enzymes [BR:
one01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
115128386
Transporters [BR:
one02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
115128386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
ABC_ATPase
Rad17
AAA_30
AAA_25
AAA_16
AAA_29
RsgA_GTPase
TMEM191C
Motif
Other DBs
NCBI-GeneID:
115128386
NCBI-ProteinID:
XP_029514058
LinkDB
All DBs
Position
LG4:45540023..45544531
Genome browser
AA seq
726 aa
AA seq
DB search
MTKMMLRTCVFAMAVGLCIDITTLAFGASISKTGTRTFDAFGNVVRLWVVTGIRLVLLLC
LSLLTLGSIKPVFKRWLAVHCFLAPVYETGRLMLYGGSPERVYGSLGLGSPSLWPLCTVA
TAAAALFWETTFPDSNGESNGKQKTQKARVLFMRVLIFYRPDTLLLVGAFIFLSLAVLCE
MFIPFYTGKVIDILGTQYKWNNFLTAIILMGLYSLGSSFSAGCRGGLFMCAINSFTCRMK
VKLFGALVKQEIGFFETIKTGDITSRLSTDTTLMGRAVALNVNVLLRTLIKTVGMLSLMM
SLSWKLTLLMLMETPITGLLQSVHDNYYQRLSKEVQDSIAMANEAAGETVGGIRTVRSFK
TEQHEAGRYNNRLMDTHNLKTRRDTVRAVYLLLRRLTAVVMQVAMLYYGRLFIQRGQMST
GNLVSFILYQSDLADNIRTLIYIFGDMLNSVGAAGKVFEYLDREPQVSTKGTLQPETLTG
HVQFHNLSFSYPTRQERKVLQGFSLELRPGQLTALVGPSGGGKSTCVSLLERFYQPQQGE
ILLDGLPLQSYQHHYLHRKIAMVGQEPVLFSGSVKDNIAYGLADCSMERVQEAARRANAH
SFISQLEKGYDTDVGERGGQLSGGEKQRIAIARALIREPQVLILDEVTSALDTESEHMVQ
EALASCPSQTLLVIAHRLKTIERADQIILIDQGTVQEQGTHQELMDRKGSYYKLRERLFT
EDDMPH
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaatgatgcttagaacgtgcgtgttcgctatggctgtaggtctatgcattgac
ataaccacattggcttttggcgcatctatttccaaaactggaacaagaacttttgatgct
ttcgggaatgtggtgcgtctatgggttgtaacggggattcggttagttttactactctgt
ttatcgctactcacactaggatcgataaaacccgtattcaagcgctggttagcggtgcac
tgtttccttgccccggtctatgagactgggcgacttatgctgtatggaggttcaccggag
cgcgtgtatggatctttgggtctggggagtccaagtttgtggccattgtgtaccgtggca
acagctgcagcagccttattttgggagacaaccttccctgacagcaatggagaaagcaac
ggtaaacagaagacgcagaaggcacgagtgctgttcatgagagtcctcatcttctacaga
cctgacaccctccttttggttggggcatttatattcctgtcactggctgtcctctgtgag
atgttcatcccattctacactggaaaagtgattgacatcttgggtacccagtacaagtgg
aataactttctcacagctatcatcctcatggggctttactctttgggaagctctttcagt
gctggctgtcgtggtggcctcttcatgtgtgccatcaacagcttcacctgcagaatgaaa
gtgaagctgtttggggccctggtgaagcaggagattggcttctttgagaccatcaagaca
ggtgacatcacgtcccggctgtccacagacaccaccctgatgggccgggcggtggcccta
aacgtcaacgtcctactgaggaccctcattaagacggtgggtatgctgtcgctcatgatg
agcctgtcctggaagctgactctgctcatgctgatggagacgcccatcaccggcctgttg
caaagcgtccatgacaactattaccagaggctctctaaggaggtgcaggactctatagcc
atggcgaacgaggcagcgggggaaacagttggcggaatccggaccgtacgaagcttcaaa
actgagcagcatgaggctggtcgctataacaacaggttgatggacacccacaatctcaag
accaggcgggacaccgtcagggcagtctacctgctcctgagaagactaacagcagtggta
atgcaggtggctatgctgtactatggcagactgtttatccagcgaggtcagatgagcact
gggaacctggtctctttcatcctctatcagtctgacctggcagacaatatcaggactttg
atttacatttttggcgacatgctgaattcagtgggggcagctggtaaggtgtttgagtac
ctggacagagagccccaggtcagcaccaaggggacactccaaccagagaccttgactgga
cacgtccagttccacaacctctccttctcctaccccacccgccaggaacgcaaagtactg
cagggcttctctctggagctgaggccgggtcagctgactgctctggtggggccatcagga
ggggggaagagcacctgtgtcagtctgctggagaggttctaccagcctcagcagggagag
atcctattggacggactgccactgcagagttaccagcaccactacctacacaggaagata
gccatggtaggccaggagcctgttctgttctctgggtccgtcaaggacaacattgcctac
ggcctggcagactgctctatggagagggtacaggaagctgctcgcagagccaacgcccac
agcttcatcagccaactggagaagggttacgacacagatgtaggagagcggggtggtcag
ctgtccggcggtgagaagcagcgtatcgccatcgccagagctctgatcagagagccacag
gtcctcatcctggacgaggtcaccagcgcactggacacggagagcgaacacatggtccag
gaggccctggctagctgcccctcccagaccctgctggtgatcgctcacaggctgaagacc
attgagagggcagatcagatcattctgattgaccaggggactgtccaggagcagggcact
caccaggagttgatggacaggaaggggagctactacaaactaagagagagactcttcacc
gaagacgacatgccacattga
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