Oncorhynchus nerka (sockeye salmon): 115128389
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Entry
115128389 CDS
T07952
Name
(RefSeq) collagen alpha-1(V) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115128389
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115128389
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115128389
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
115128389
NCBI-ProteinID:
XP_029514063
LinkDB
All DBs
Position
LG4:complement(45600085..45646607)
Genome browser
AA seq
2135 aa
AA seq
DB search
MDIRDCPFRKKRRPWSVDLSSFALVTLVLALCQLPVARADPVDVLRMLQLPSLPEGVRKV
PGFCTSRRAGTADHAYRISKKAQISAPTNQLFSGRFPENFSIMALVKAHAGLQAFLLSIY
SEQGVQQLGVELGRSPVFLYEDQTGKPAPEDYPLFSGVNLADGKWHRIAISVSKKNVTLL
LDCKKRMTRALPRSKSPVVDTKGITVFGARLLDEEVFQGDIQQLLIASNPQAAYDFCEHY
SPDCDSPLPKTQSQDPNTYKDANGNADKRKPVVVKAAKPVVVKAAKPVVVKAVKPVVKAA
KPVEVKAAKPVVVKAAKPVVKAAKPVVVKAAKPVVVKAAKPVVVKAAKPVVDKAAKPAPS
KPAKAEIAKLEAKAAAPATAKLAKTEPAATKPTKAKPSPAKQAKAKPTAIEVLLAKIKPT
AVTPVVKPTPATKNGGGKKVNGKPVVEKKLNGNSKVNGNAQPVVEKKVKGEAKVNGNGKT
AEDKKVNGDGKSGSYRKANGNGVGAAKPGTTKAPTERKVTKVQIEKTVVSKVKPAKPETE
VKVKVVKTEITKAKPTESVVIKVPPFPKPAPKKELPEKTKVALDVNNIKSMTPKMPPFGK
TALSGTVVPVPEKPKKKPGNGYQQDVEMANSEAGHTPTESDYYYEEAVLQPESEVIGQEA
TTGQVEGTLVAEEVELAKAGGEVEAFTEEEYVTGDLGMKEYDYSYKDYNEPLPEGETGGN
MGPALSAVTDEGGASVSAVKGEKGEPAVLEPGMLIEGPPGPEGQAGLPGPNGPSGPPGSV
GDPGERGLSGKAGIAGADGVPGPPGTSVMLPFRFGSSGGDKGPMVSAQEAQAQAILSQAR
LALKGPPGPMGYTGRTGPLGTPGSAGLKGEGGDPGPQGPRGPQGLSGPPGKSGRRGRAGA
DGARGMPGEGGPKGDRGFDGLPGLPGDKGHRGDTGGLGPQGGLGEDGERGDDGDIGPRGL
PGEPGPRGLLGPKGPNGISGPPGVRGNDGPHGPKGNLGPQGEPGPPGQQGTSGTQGMPGP
QGAHGPPGEKGPTGKPGLPGMSGADGPPGHPGKEGPVGTKGNQGPNGPQGTLGYPGPRGI
KGTQGIRGLKGHKGEKGEDGFPGIKGDFGVKGERGEGGVPGPRGEDGPEGPKGRVGPPGE
LGPIGLVGEKGKLGVPGLPGYPGRLGPKGSLGFPGFPGTNGEKGTRGLIGKLGPRGQRGP
TGPRGQRGPRGSTGKPGAKGTSGSDGPSGPPGERGLPGPQGANGFPGPKGPPGPPGKDGL
PGHPGQRGEVGFQGKTGPPGPPGVVGPQGPSGETGPLGERGHPGPPGPPGEQGLSGPSGK
EGTKGDPGPQGGPGKDGPSGLRGFPGERGMPGTPGGGGLKGSEGPAGPPGTAGSPGERGQ
GGSGGPIGPPGRPGPQGPPGPSGEKGVPGEKGPIGPAGRDGVQGPVGLPGAAGSIGVPGE
DGDKGEVGEHGQKGAKGGKGEHGPPGPPGPMGPLGQPGTAGADGELGARGQQGPFGAKGD
EGSRGFPGAPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGSSGADGPQGPPGG
VGNPGNLGDKGEPGEAGPPGIGGEPGKKGPRGEHGDKGEAGQPGTSGPAGGRGGPGDDGP
KGNPGPVGFPGDPGPPGELGPRGQDGAKGERGEDGEQGQAGSPGPTGENGPPGGPGKRGL
AGTRGPEGRQGEKGTKGDPGANGPPGKTGPVGPQGQPGKPGTEGLRGLPGSVGEQGSPGL
SGQKGPPGPLGPPGLPGLRGEGGDKGEKGHSGLIGLIGPTGEQGEKGDRGLPGPQGTHGS
KGETGVSGGTGPIGPGGPAGMPGPEGVKGAKGATGGAGPKGEKGVSGPPGSPGPPGEVIQ
PMPIQISKKSKRSIDASRMLSETDAESAAADATGTEFLTGSEGMEEIFGSLNSLRQEIET
MRFPLGTKDSPARTCQDLKLSQPELKDGEYWIDPNQGCSRDSLKVFCNFTAGGETCLYPS
KSVDTVKLNSWTTEKPGSWYSEFATGSKLSYVDSSGEPIGVVQLGFLRLLSVQARQNFTY
HCHRSVAWADRTANNGHKRALHFQGANDEDLSYETSPYIKALVDGCSYRKGFDRTVVEVN
TPQVEQLPLRDLKITDFGESNQKFGFEVGPVCFLG
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
atggatattagagattgcccttttcggaagaagcggagaccatggagcgtggacctttcc
tcttttgccttggtaactctggtgctcgcgctgtgccaactacccgtggctcgagcagat
ccagtggatgtgttgcggatgctgcagctgccctctctccccgagggggtgcggaaggtt
ccaggcttctgcacctcccggcgtgccggtaccgctgaccacgcctaccgcatctccaag
aaggcccagatctctgcccctaccaatcagctcttctcaggtcgtttcccggagaacttc
tccatcatggctctggtcaaggcccatgcgggcctccaggccttcctgctgtccatctac
agtgagcagggtgtccagcagctgggggtggagctgggacgttcccctgtcttcctgtac
gaggaccagaccggcaagcccgcgcccgaggactaccccctcttcagtggcgtcaacctg
gccgacggcaagtggcaccgcatcgctatctccgtgtcgaagaagaacgtcactctgctc
ctggactgtaagaagcgcatgaccagggccctgccccgcagcaaaagccccgtggtggac
accaagggcatcaccgtgttcggagcacgcctgctggatgaggaagtgttccagggtgat
atccaacagctgctgatcgcatccaaccctcaggctgcttatgacttctgtgaacactac
agccccgactgtgactcccctctacccaaaacccagtcccaggaccccaacacatacaag
gatgccaatggcaatgctgacaaacgcaaacctgtagtagttaaggctgcaaaacctgta
gtagttaaggcggcaaaacccgtagtagttaaggctgtaaaacctgtagtaaaggcggca
aaacctgtagaagttaaggcggcaaaacctgtagtagttaaggctgcaaaacctgtagta
aaggctgcaaaacctgtagtagttaaggctgcaaaacctgtagtagttaaggctgcaaaa
cctgtagtagttaaggctgcaaaacctgtagtagataaggcggcaaaacctgccccatcc
aaacctgcgaaagcagagattgccaagcttgaggccaaagctgccgcacctgccacagcc
aaactagctaaaaccgaacctgctgccaccaagcccaccaaagccaagccttccccggcc
aaacaagccaaagccaaaccaactgcaattgaagtcctcctggccaagatcaaacccact
gcagtcacaccagtggtcaagcccacacctgccacaaaaaatggcggtggaaaaaaagtc
aatggcaagcctgtagtagagaagaaactaaatggtaattccaaggtcaatggcaatgcc
caacctgtagttgagaagaaagtaaaaggtgaggccaaagttaatggcaacggtaaaact
gctgaggataagaaagttaatggtgatgggaaaagcggcagttacagaaaagctaatggc
aacggtgtaggagcagccaaacctggaaccactaaagccccgacagaaagaaaagtcacc
aaagttcaaatagaaaaaactgtggtcagcaaagtgaaaccagcaaaaccagaaaccgaa
gtcaaagttaaagtagtaaaaacggagatcactaaagccaaaccaacagagtcggtcgtc
atcaaagttcctcccttccccaaacctgcaccaaagaaagagctgccagagaaaaccaag
gtggcgcttgatgtaaataacatcaaatcgatgaccccaaaaatgcctccctttggcaag
actgcactcagtggcaccgtcgtccctgtgccggaaaaaccgaagaagaaaccgggcaac
ggttatcaacaggatgtagaaatggcaaattctgaggctggccacacccctacagagtcg
gattattattatgaggaggcggtcctacagccagagagtgaggtgattggacaagaagcg
accactggccaggtggagggaacgttggtggcagaggaggtagagttggccaaggcaggg
ggtgaggtcgaggcctttactgaggaggagtatgtgaccggagacctgggcatgaaggaa
tacgattattcctacaaggactacaacgagcccctgcccgagggagagaccgggggcaac
atgggccccgccctgtccgctgtgacagacgagggaggcgcctcagtgagcgccgtaaaa
ggcgagaagggagagcctgctgtccttgagcctggtatgttgattgagggacctccggga
ccagagggacaggcaggtctcccgggacctaatggcccatctggccctcctggctctgtc
ggtgatcctggcgagaggggcctctctggaaaggctggtatcgctggtgccgatggggtg
ccaggccctcctggaacgtccgtcatgctgcccttccgtttcggaagcagtggaggtgac
aagggtcccatggtctcagcgcaggaagcccaggctcaggccattctgtctcaggccagg
ctggctctgaagggaccacccggaccaatgggctacactggacgcacaggacccctgggt
acccctggaagtgctgggctgaagggtgaaggtggggatcctggacctcagggccccaga
ggaccacagggtttgagcggacctcccggcaaatcaggaagaaggggtcgtgctggagct
gatggagccaggggcatgccaggagagggtgggcctaagggtgaccgcggtttcgatggc
ctgcctggattgcctggggacaaaggacaccggggtgataccggaggattgggaccccaa
ggaggtcttggagaggacggagagaggggagacgacggagacatcggacccagaggactt
ccaggtgaaccaggacctcgtggtttgctcggtcctaaaggtccgaacggaatctccgga
cctcctggtgtgcgtggaaacgacgggccccacggtcctaaaggaaacctgggtccccaa
ggagagccaggccccccagggcagcagggtacctcaggaacacagggaatgccaggacca
cagggagcccatgggcccccaggagaaaagggccccacagggaaacccggtctgccaggc
atgtccggagccgacggcccccctggtcacccaggaaaggagggacctgttggcaccaaa
ggaaaccagggccccaacggtcctcagggaacattaggctatcctggccctcgtggcatt
aagggaactcaaggtatccgtggactgaagggtcacaaaggagagaagggagaagatggc
ttccctggaatcaaaggagactttggtgtcaagggggagagaggagagggtggagtgccc
ggccccaggggagaggacggtcctgagggaccaaagggccgcgttggcccccctggcgag
cttggacccatcggcctggtcggggagaagggtaaacttggtgtccctggacttcctggc
tatcctggaagacttggacctaagggctccctcggtttcccaggattccctgggaccaac
ggcgagaaaggaacacggggtctgattggaaagctgggacccagaggacaaagaggacca
acgggccccagaggtcagagaggaccgagaggatctactggcaaaccaggagccaaaggt
acatcaggaagtgacggcccatctggtccaccaggagagaggggactgcccggacctcaa
ggagcaaacggtttcccggggccaaagggacctcccggaccaccagggaaggatggactg
cccggacaccctggacagagaggagaagttggattccaaggaaagactgggccacccggg
cctccaggtgttgttggacctcaaggtccctcaggagagactggccccctgggcgagcgc
ggtcaccccgggcctccaggaccaccaggcgagcaaggactctccggaccctctggcaag
gagggaactaagggagaccctggtccccaaggcggccccggcaaagatggaccctcagga
ctgagaggcttccccggagagagaggaatgcctggcaccccgggaggcggcggactgaaa
ggaagcgaaggcccagcaggacctcccggaacagctggatccccaggcgagagagggcag
ggaggcagtggaggccccatcggacccccaggaagacctggcccccaggggcctccagga
ccatcaggagagaagggcgtgcccggggagaaaggtccgatcggcccggctggtcgtgac
ggtgtccagggcccagtgggtctgccaggtgctgccggatccatcggagttccaggagag
gacggagacaagggtgaggttggagagcacggccagaagggagcgaagggcggcaaagga
gagcatggtcctcccggtccaccagggccaatgggtccactcggtcagcccggcactgct
ggagctgatggagaactaggagccagaggtcagcaggggccatttggggccaagggagat
gaaggatcaagaggattcccaggggctccaggtcccattggactgcagggattgccaggc
ccatcaggagagaagggagagacgggagatgtcggaccaatgggtccacctggcccccca
ggaccccgtggccctgctggttcaagcggcgctgacggtcctcaaggtcctcctggtggt
gtgggtaaccctggaaacctgggagataagggagagcctggcgaagccggaccacctgga
atcggaggagagccaggaaagaagggcccacgtggagaacacggagacaagggagaggcg
ggacaacctggtacttctggccctgctggtggaagaggaggccctggagacgacggaccc
aagggaaaccctggccctgttggtttcccaggcgaccccgggccccctggtgaactcggc
cccagaggtcaggacggagcaaagggagagagaggagaggacggtgaacaaggacaagct
ggatctcctggacccactggtgagaacgggcctcctggaggaccaggaaagaggggtctt
gctggaacgagaggaccagagggacgacagggagagaagggaactaagggagatccaggt
gccaacggacctccaggaaagacaggccctgtcggacctcagggtcaaccaggaaaacca
ggaactgagggtctgagaggactccctggatcagtgggcgagcagggttctccgggcctt
tccggccagaagggacctcccggaccgctgggaccgccaggtttgccaggactgcgcggc
gagggcggtgacaagggagagaagggacactcgggtctgattggtctcattgggcccacc
ggagagcagggagagaagggagacaggggactgccagggccacaggggacacacggatcc
aagggagagactggtgtttctggaggcactgggcccatcggtcctggtggccctgctggt
atgcccggtcccgaaggtgtgaagggagctaagggtgctacaggaggagctggtcccaag
ggagagaagggtgtctcaggaccccccgggtctccaggtcctccaggcgaagtcatccag
ccgatgcccatccaaatctccaagaagtccaagcgctccatcgacgccagccggatgctg
tctgagacagacgcagagtcggctgcagccgacgccaccggcacagagttcctgacaggc
agtgagggtatggaggagatcttcggctcactgaactcgctgcgacaggagattgagacc
atgcgcttccctctgggcaccaaggacagccccgcacgcacctgccaggacctcaaactc
agccagccagagctcaaggacggagagtactggatcgaccccaaccagggttgctctcgc
gactctctcaaggtgttctgcaacttcaccgctggtggggagacgtgtctgtaccccagc
aagagcgtggacacggtaaagctcaactcttggaccacggagaaaccgggctcctggtac
agtgagtttgcaactggcagcaagctttcgtacgtggactcgagtggcgagccgatcggc
gtggtccagttgggcttcctgcggttgctgagtgtccaggcccgccagaatttcacctat
cactgccaccgctccgtggcctgggccgaccgcactgctaataacggccacaagagggcg
ctgcacttccagggcgccaacgatgaggacctcagctacgagaccagcccatacatcaag
gccctggtcgacggctgctcttatcgtaagggcttcgacaggacagtggtggaggtgaac
acgccccaggtggagcagcttcctctgcgggacctcaagatcacagactttggggaaagc
aaccagaaatttggctttgaagtgggacctgtctgtttcctgggctaa
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