Oncorhynchus nerka (sockeye salmon): 115128391
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Entry
115128391 CDS
T07952
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03320
PPAR signaling pathway
one04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
115128391
03320 PPAR signaling pathway
115128391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115128391
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
one03310
]
115128391
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
115128391
Nuclear receptors [BR:
one03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
115128391
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
115128391
NCBI-ProteinID:
XP_029514066
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Position
LG4:complement(45667856..45690399)
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AA seq
471 aa
AA seq
DB search
MGDSRDSRSPDSSSVSSPPSGQRSPPLTPTAAAMTSLPPVTSAVNSPISSMGSPFSVISS
SLGSPCLPGTPSVGYGPISSPQINSTVSMSGLHAVSSSDDVKPPFGLGGHSPGGPMLSQK
RLCAICGDRSSGKHYGVHSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRY
QKCLACGMKREVVQDERQRSVQEERQRNKERESEVESTSAINEEMPVEKILEAEMAVEQK
TELHADGSSGDSSVNPNDPVTNICQAADKQLFTLVEWAKRVPHFSELALDDQVILLRAGW
NELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLT
ELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLESYCKQRYPDQ
QGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacagcagagattcccgcagcccagacagctcctctgtgtcctcccctccctcg
ggccagcgctcgccacccctgacccccacagctgctgccatgacctctctgccgcccgtc
acttcggccgtcaacagccccatcagcagcatgggctcgcccttctctgttatcagctcc
tccctggggtcaccctgcctgcccgggacaccctcggtgggctacggccccatcagcagc
ccccagatcaactccacagtgtccatgtcggggctgcatgcggtcagcagctcggatgac
gtgaagcctccgttcggactgggaggccacagcccagggggccccatgctctcccaaaag
cgcctgtgtgccatctgtggtgaccgctcctccggtaagcactacggagtgcacagctgc
gagggctgtaagggtttcttcaagcgcacggtgcgcaaggacctgagctacacctgccgg
gacaacaaggactgcctggtggacaagcgccagcgcaaccgctgccagtactgccgctac
cagaagtgcctggcctgtggcatgaagagggaagtggtccaagatgaacgacagagatcc
gtgcaggaggagcgccagaggaacaaggagcgggagagcgaggtggagtcgaccagtgcc
atcaacgaggagatgcctgtggaaaagatcctagaggcagagatggccgtggaacagaag
accgagctgcatgccgatgggagctccggggacagctcggtaaatcccaacgacccagtc
accaacatctgccaggctgcagacaagcagctgtttaccctggtggagtgggccaagagg
gtcccccacttctctgagctggccctggacgaccaggtcatcctgctacgtgccggttgg
aacgagctgctgatcgcttccttctctcaccgctccatcagtgtgaaggacggcatccta
ttggccaccggcctacacgtgcacaggaacagcgcccacagtgccggcgtgggagccatc
ttcgacagggagagtgcgcacaatgcagaggttggagccatatttgacagagttctcacg
gagctggtcagtaagatgagagacatgcagatggacaagacggagctcggctgccttcga
gccatcatcctcttcaacccagatgccaagggcctgtccagccccagtgaagtggaattg
ctgagggagaaggtgtacgcatcgctagagtcctattgtaaacagagataccccgaccag
cagggcaggttcgctaagctcctactccggctgccagcgctgcgctccatcggcctgaag
tgcctggagcacctgtttttcttcaagctgattggcgacacccctatcgacacgttcctc
atggagatgctagaggcgccccaccagctgacctaa
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