Oncorhynchus nerka (sockeye salmon): 115128395
Help
Entry
115128395 CDS
T07952
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog isoform X1
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115128395
Membrane trafficking [BR:
one04131
]
Protein recycling
Others
EARP complex
115128395
Endosome - Golgi transport
Tethering complex
GARP complex
115128395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
DUF5740
CoV_NSP7
Cep57_MT_bd
MscS_porin
DUF3440
Rubis-subs-bind
COG6_N
DUF1664
ATG16
Motif
Other DBs
NCBI-GeneID:
115128395
NCBI-ProteinID:
XP_029514080
LinkDB
All DBs
Position
LG4:45749266..45760168
Genome browser
AA seq
724 aa
AA seq
DB search
MADRAVTAAMSDVNTTVHSTANSMAYLQDEMKPDTDAMAPLNLGDLDLTTDEFILDEVDI
HIQANLEDDLVKEALKTGVDLRQYSKQVEDELQRIEQASIKDYIKESQNIASLHNQITAC
DSILERMEGMLSGFQSDLSSISSEIQTLQQQSVSMNMRLKNRQAVRSHLSQLVDELVVPG
AMIQVILESPVTEQEFLEQLHELNNKINFAKELSFRETLACSDIQDIVDRLKIKAVTKIR
EFILQKIYSFRKPMTNYQIPQNTLLKYRFFYQFLLANERTVAKEIRDEYVDTMSKIYYSY
FKSYSGRLLKVQYEEVADKDDLMGVEDTAKKGFFSKPSLKSRNTIFTLGQRGAVLSPAEL
EGPILIPHTAQRGDCRYPYETLFRSQHYALLDNGCREFLFLSDFFMVAGNSGLDLFNSVM
GKTLSLFLKSMSTYVSDCYDSIAVFLCIHIILRFRAITNKRTIPALDKYWDAVLELLWPR
FELILEMNIQSIRNTDPQKLGVLDTRPHYITRRYAEFSSAIVSINQTFTSERTHTLLGQL
QVEVENFVLKMAAEFPSRRDQLIFLINNYDMMLSVLMERAADDSKEVEGFQQLLQARSQE
FIEEILSSPFGGMIAFVKESEALTEKGQLDRLKNDEARITQLVRGFSSTWKQSVEALSQD
VMRSFTNFKNGTGIIQGALTQLIQYYHGFHKVLAQPTFRSLAVRSELINLHHLMVEVKKH
KPNF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcggatagagcagtgactgctgctatgtccgatgtaaacacaactgtccactcaacg
gcgaattccatggcatatttacaagatgagatgaagcctgacacagatgccatggccccg
ctcaacctgggtgacttggacttgaccacagatgagttcatcttggatgaggtggacatt
cacatacaggctaatcttgaagatgacttggtgaaggaggcgttgaaaacgggagttgac
ctccggcaatactctaaacaagtggaggatgaactccaacggattgaacaagcttccatc
aaagactatatcaaggagagccagaatattgcctctctgcacaaccagatcacagcctgt
gactccatactggagcgaatggagggcatgctgagcggcttccagagtgacctctcgtcc
atcagcagtgagatccagactctgcagcagcagtcggtcagcatgaacatgcggctgaag
aacaggcaggctgtacgcagccacctcagccaactggtggatgagctggtggtgcccgga
gctatgatccaggtaatcttggagagcccggtgacagagcaggagttccttgagcagctc
catgagctcaacaacaagatcaactttgccaaagagctcagcttcagggagactttggcc
tgctctgacatccaggacattgtggaccgcctcaaaatcaaggctgtcacaaagatccga
gaatttatcctgcagaagatttattccttcagaaagcccatgaccaactatcaaatcccc
cagaacaccctcctcaagtacaggtttttctatcagttcctcttggcaaacgaaaggaca
gtggccaaggagatcagggatgaatatgtggacaccatgagtaagatctactacagttac
ttcaagtcgtacagcggcaggctcctcaaagtacagtatgaagaggtggcagacaaagat
gacttgatgggagtggaagacacggccaagaaaggtttcttctccaagccctccctgaag
agcaggaacaccatcttcaccctgggccagcggggggccgtgctgagccctgccgagctg
gaggggcccatcctcatcccccacactgcccagagaggggactgcaggtatccctatgag
acgctgttccgcagtcagcactacgccctcttggacaacggctgtcgagagttcctcttc
ctgtctgacttcttcatggtggctggaaattctgggctggacctcttcaacagcgtcatg
ggaaagacactcagcttgttcctgaagagcatgtccacctatgtgtcggactgctacgac
agcatcgccgtgttcctgtgtatccacatcatcctgcgtttcagagccatcacaaacaag
aggaccatcccagccctggacaagtactgggatgcggtgctggaactgctgtggcccagg
tttgagcttatcctggagatgaacattcagagcatccgcaacacggatcctcaaaaactg
ggcgtgctggacaccagaccacattatatcacacgcagatatgcagagttctcttctgcc
atagtcagcattaaccagacattcaccagcgagcgaacccacaccctccttggccaactt
caggttgaagtggagaactttgtcctgaagatggctgcagagttcccttcacgcagggac
cagctcatcttcctcatcaacaactacgacatgatgctcagtgtgctcatggagagggca
gctgatgacagtaaagaggttgagggcttccaacagctcctccaggccaggagccaggag
tttattgaggagattctgtcctctccctttggtggcatgatagcatttgtgaaggagagc
gaggcgctgacggagaaagggcagctggatagactaaagaatgacgaagcccggatcacc
cagctggtcaggggtttctccagcacatggaaacagtctgtggaggctctgagtcaggac
gtcatgaggtccttcaccaacttcaagaacggcactggcatcattcagggagcgctcact
cagctgatccagtactaccatggcttccacaaggtactggcccagcccacctttcgcagc
ctggccgtgcgctctgagctcatcaacctgcaccacctcatggtcgaagtcaagaaacac
aagcccaacttctaa
DBGET
integrated database retrieval system
