Oncorhynchus nerka (sockeye salmon): 115128516
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Entry
115128516 CDS
T07952
Symbol
ctdp1
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase isoform X1
KO
K15732
RNA polymerase II subunit A C-terminal domain phosphatase [EC:
3.1.3.16
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115128516 (ctdp1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115128516 (ctdp1)
Enzymes [BR:
one01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
115128516 (ctdp1)
Protein phosphatases and associated proteins [BR:
one01009
]
HAD phosphatases
Fcp/Scp phosphatases
115128516 (ctdp1)
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
115128516 (ctdp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FCP1_C
BSH_Fcp1
NIF
PTCB-BRCT
BRCT
Biotin_lipoyl
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
115128516
NCBI-ProteinID:
XP_029514270
LinkDB
All DBs
Position
LG4:complement(50454119..50575100)
Genome browser
AA seq
1046 aa
AA seq
DB search
MEEPADSGGGGAAQGPMAQVAEIRCPIAARPMRLLEWKVKPGSLVNVDSVLALCAPIPPE
KESGSHPPEQPNRLSEKKLKSDRAGVVKELCCQLGQVISPGVVIVRVEECSHPIVMKGLC
AECGQDLTQMQTNNGRQQALISTANVSMVHSVPELMVSSEQAEQLGREDQQRLHRNKKLV
LMVDLDQTLIHTTEHHCQLMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHV
FTFGSRLYAHTIAGFLDPEMKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDR
EDVWKFAPNLITVKKYIYFKGTGDINAPAGSKEAQQGRKAGSQASRPAEASEPAVTSGTT
GPKTGPSGGSSASEEQSNGLKKQRAKDHNNGGRGESTAPSATQGSTANERTQPDGGEAVE
EERGQGEGAEASAAAQVSDRMNVKDEMKAEGNGEGKDGSRTLGSGEEAPLPGGVNSSSTP
LPPSSTPPDLHEPNSNLDFDLSSDSDADSLTGKPTSSDNERDGVSSQTKKSKQEGEEQAA
VEEPSGGAGGRESENSSAVVGETSDETSGSEVVFPPDPEQENGRLERREAETESQNSEQS
GVTMGEESLDPSMEEEEEEEKGEVDVDKDDHLIYLEEVLERIHGEYYARYSAFLGKERPE
MPDIRKIVPELKARSLEGTTIVFSGLYPTNYPMERTRENYHAKALGAKIGKSLLLRSKDP
GRTTHLIAARAGTEKVRQAQGCKHLHVVNPDWLWGCLERWERVEESLYPLKEDYTKTQRS
NSPVTFPDLQGSFQNPRFPPAPIHHHPPAAPEVRTYDPVTGKLIRRGTQASRPPSYLQAS
MSAAHGDQTSLRGGQKDQQGETAGPSSRDDEQPGPSCRRRERQPSMSETNPLYTFCKEDL
DSMDKEVDDMLDEESDEEGDGRGKKTREMEEEDEMEEEAEGQRPQSSGQSTEGEKQHHEQ
QHHHHHHHQPGLATVIEETEKAQMPPSDQGDMMTGSVPRGQKRKLEEEEGESADESTKDS
NEEEEGSSSEADEMAAALDAELNDFM
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcccgcagattctggcggtggcggggcagcacagggccccatggcgcaagtg
gcggagattcgctgcccaatagcagcgcgtcctatgcggctcctggaatggaaagtcaaa
cccggttccctcgtcaatgtggactcggtattggcgttatgtgctcccatcccaccggag
aaagagtccgggtcccatccgccagaacagcccaatcggctgtcagagaagaagctgaaa
tcggaccgagctggagtggtgaaagagctatgctgtcaacttggacaagtcatatcgcct
ggtgttgtgattgtaagagtagaagaatgcagccatcccattgtgatgaagggcctgtgt
gctgaatgtggccaggacctcacacagatgcagaccaataatgggaggcagcaggctctc
atctccacggcaaatgtttccatggtgcacagtgtccctgagttgatggtcagctctgag
caagcagagcagctgggcagagaggaccagcagagactccacaggaacaagaagctggtt
ctgatggttgatctggaccagaccctgatccacaccaccgagcatcactgccagctcatg
tccaacaagggaatcttccatttccagctgggacggggggagcccatgttacacacgcga
ctgcgtccgcactgcaaagacttcctggagaagatcgccaagctctacgagctgcacgtc
ttcaccttcggaagccgcctctatgcacacaccatcgcaggcttcctggaccctgagatg
aagctgttttcccacaggatcctgtccagagacgaatgcatcgaccccttctccaagaca
gggaacctgaggaatctgttcccatgtggggactcgatggtatgtattatagatgaccgg
gaggacgtgtggaagtttgctcccaacctgatcactgtgaagaaatacatctacttcaag
gggacaggagacatcaacgccccagccgggtctaaagaggctcagcagggaaggaaagca
ggcagccaggccagccgaccagcagaggcctcagaaccagcagtaacgtcagggacaaca
gggcctaaaacagggccatctggggggtcgtctgcatcagaggagcagagtaatggtctt
aagaaacaacgggccaaagaccacaacaatggagggaggggggagtcaacagcaccctca
gccactcagggttcaacagctaatgaacggactcaaccggacggtggcgaggctgtggag
gaggagcggggtcagggcgagggagccgaggccagcgcggcagcacaggtgagcgacagg
atgaatgtgaaagatgagatgaaagcggaggggaatggagaggggaaggatggcagcagg
acattgggctcaggggaggaagctccccttccgggtggggtgaactcctcctccactcct
cttcctccatcatccactcctccagacctccatgagcccaacagcaacctggactttgac
ctgtccagcgacagtgacgctgactctcttacgggtaaacccacctcatcagacaacgag
agggacggggtgtccagccagaccaagaagtccaaacaggaaggggaggagcaggcagca
gtagaggagccatcaggtggggctggaggaagggagagtgagaacagctccgcggtagta
ggggagacctcagatgagacatctgggtcagaggttgtcttccctccagacccggagcag
gagaacgggcgcttagagcggagggaggctgagacagagtcccagaacagtgaacagtca
ggagtcaccatgggggaggagtctctggacccgagcatggaggaggaggaagaggaagag
aaaggggaggtggacgtggacaaggatgaccacctcatctacctagaagaggtgctggag
cgtatccatggagagtactacgcccgctacagcgccttcctcgggaaggaacgcccagag
atgcctgacatcaggaagatcgtcccggagctgaaggcccggagcctggagggcaccacc
attgtgttctctggactgtaccccaccaattaccccatggagagaaccagggagaattac
cacgccaaggccctgggagcaaagataggaaagagcctcctgctccgctctaaagaccct
ggcagaaccacacacctcattgctgctagagcaggtacagagaaggtgcgtcaggcccaa
ggctgtaaacatctccatgtggtgaatcctgactggctgtggggatgtctggagcgctgg
gagagggtggaggaatcactgtatccactgaaggaggactacaccaagacccaacggagc
aacagcccagtcacgttccctgacctccaagggtccttccagaacccccggtttcccccc
gcccccattcaccaccaccctccagctgcccctgaggtgcggacgtacgacccagtcacg
gggaagctgattcgccgtgggactcaggcctccagaccaccatcttacctccaggcctcc
atgtctgctgcccatggcgaccagacctcgctcagggggggtcagaaggaccaacagggg
gagactgcgggtccctccagtcgagacgacgagcagcctggaccctcctgtcggcggagg
gaacgccagcccagcatgtcagagaccaaccccctctacacattctgtaaagaagacctg
gacagcatggacaaggaggtggacgacatgctagatgaggagagcgatgaggagggagat
ggccgggggaagaagacaagggagatggaggaggaagatgagatggaggaggaagcagag
gggcagcgtccccagagtagtggacagagcactgagggagagaagcagcaccacgagcag
cagcaccaccaccaccaccaccaccaaccgggtcttgccactgttatagaggagacggag
aaggcacagatgccacctagtgaccagggcgatatgatgacgggtagcgtgccaagggga
cagaagcgcaagcttgaggaggaagagggggagtcggcggacgagtccaccaaggattct
aacgaggaagaggaaggaagcagctcagaggctgatgagatggccgctgccctggatgcg
gagcttaacgacttcatgtga
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