Oncorhynchus nerka (sockeye salmon): 115128564
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Entry
115128564 CDS
T07952
Name
(RefSeq) thyroid hormone receptor beta-like isoform X1
KO
K08362
thyroid hormone receptor beta
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04080
Neuroactive ligand-receptor interaction
one04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
115128564
04081 Hormone signaling
115128564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115128564
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
one03310
]
115128564
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
115128564
Nuclear receptors [BR:
one03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
115128564
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Ntox3
CpXC
Motif
Other DBs
NCBI-GeneID:
115128564
NCBI-ProteinID:
XP_029514354
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Position
LG4:complement(53590914..53728724)
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AA seq
396 aa
AA seq
DB search
MSEQGDKCTTPRWKHEAMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRT
IQKNLNPTYACKYEAKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEE
NRERRRKDELQKTVWDRPEPSQEEWDLIRMVTEAHMSTNAQGNHWKQKRKFLSAVGVKET
KPEDIGQAPVINAPEGSKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILL
KGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFHL
DDSEVALLQAVILLSSDRPGLTSVERIERCQEEFLLAFEHYINYRKHKVAQFWPKLLMKV
TDLRMIGACHASRFLHMKVECPNELFPPLFLEVFED
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcaaggagacaaatgcaccaccccccgctggaaacatgaggccatgcaaaat
gggtacatccccagttacctggacaaggacgagttatgtgtagtatgtggggataaagct
acaggatatcactatcgctgtatcacctgtgaaggatgcaagggtttcttccggcggacg
atccagaagaacctgaacccgacgtacgcttgtaagtacgaggcaaagtgcgtcatcgat
aaggtgaccaggaaccagtgccaggaatgccgcttcaagaagtgcatcgctgtcggcatg
gcaacagacttggtgctggacgacagcaagcggctcgccaagcggaagttgatcgaggag
aaccgtgagcggcggcggaaggatgagctccagaaaacggtgtgggaccggcctgagccg
tcccaggaggagtgggacctgattcgcatggtcaccgaggcccacatgtcaactaacgcc
cagggcaaccactggaaacagaaacgcaagttcttgagtgcagtgggggtgaaggaaacc
aagcctgaggacattggccaagcaccggtcataaatgcacctgaagggagcaaagtggac
attgaagccttcagtcagtttacaaaaattatcacccccgccattacccgagtggtggac
tttgccaaaaagctgcctatgttctgtgagctgccttgtgaagaccagattatcctattg
aaaggctgctgcatggagatcatgtctttacgggcggccgttcgctacgaccccgagagc
gagacgctgacacttaacggggagatggccgtgacccgcggccagctgaagaacggaggc
ctgggtgtagtgtcggatgccatctttgatttgggcgtgtcgctgtcgtcgttccacctg
gacgactctgaggtcgctctgctacaggccgtcatcctcctgtcctccgatcgtccgggg
ctgaccagcgtggagcgtattgagcgctgtcaggaggagttccttctggcctttgaacat
tacatcaactaccgcaaacacaaggtggcgcaattctggcctaagctgctgatgaaggtg
acggacctgcggatgatcggggcgtgccacgcctcccgcttcctgcatatgaaggtggag
tgccccaacgaactcttccccccacttttcctggaggtttttgaggattga
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