Oncorhynchus nerka (sockeye salmon): 115128600
Help
Entry
115128600 CDS
T07952
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115128600
04121 Ubiquitin system [BR:
one04121
]
115128600
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115128600
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115128600
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115128600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
TEN_NHL
zf-RING_5
zf-C3HC4
zf-RING_2
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
115128600
NCBI-ProteinID:
XP_029514426
LinkDB
All DBs
Position
LG4:55822394..55874052
Genome browser
AA seq
839 aa
AA seq
DB search
MASFSDSDLQTCPLCKELCGSSSTPISSNSSTSSSSSHSSSSSFSSRRLHVLPCLHAFCR
QCLEGQRSPGDPLKLSCPTCNQKVSISEAGVDSLPSSNFLFSNLLDVVVSSEEQLQLGQN
INGHHRGVSGGSIPGFHHPHGGLLRPHRLGEPTCSSCDEGNPAGSHCLDCQEYLCDNCVR
AHQRVRLTKDHFIERLAESLHQHQAGRGKIIPIGGGGEGGGSVGVSLAQSFHYNFSLLPL
FQDRMSFCQNHDNEVFLFFCETCSVPICRECSVGRHVGHSFVYLQDAVQDSRDITIQLLA
DAQQGRQAVQLSMEKAQAIVEQVEIKAKLVQTEVKNIILRHKKALEERECQLLWRVEKIR
QLKAKSLYLQVEKLHQNLTKLDSTIAAVTQVLDEGRHLDVLLARERMLTQIQELKSLRGL
LQSQEDDRFMFMPPDQALYIAIQSMGLISSGAFATVTKAHGEGLKTALRGKPASFTVIGY
DHDGEPRLSGGDAVSAVVMAAVDGNLSAAEVCDHLNGSYTVSYLPKAEGEYLVSVLVCNQ
HIMGSPFKVLVKSGRSYGALGSPVSAFGGEGEGEGQLCRPWGISVDKEGYVVVADRSNNR
VQIFKPCGAFYHKFGSLGSRPGQFDRPAGVACDSQRRIIVADKDNHRVQVFTFDGQFMLK
FGEKGTKNGQFNYPWDVAVNSAGKILVSDTRNHRVQLFGPDGSFINKYGFEGALWKHFDS
PRGVAFNHEDHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQENRII
VADSRNHRVQVFEPNGNFLCKFGMQGSGFGQMDRPSGVAVTPDGVIVVVDFGNNRILKF
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcttcattctcagactccgacctacaaacctgtcctctctgcaaggagctctgtggc
tcctcctccactcctatttcctccaactcctccacctcatcctcctcatctcattcctcc
tcctcgtcgttctcctcccggcgcctccatgtcctcccctgcctccacgccttctgcagg
cagtgtctggagggccagcgcagccctggggaccctctcaaactcagctgccccacctgc
aatcagaaggtctccatctctgaagccggagtggactccctcccttcctccaacttcctc
ttcagtaaccttctggatgtggtggtgagctccgaggagcagctccaactcggccagaat
atcaacggccaccaccggggggtcagcgggggctccatacccgggttccaccacccccac
ggcggactcctccgcccacaccgcctgggagagcctacgtgtagctcttgtgacgagggg
aacccggccggctcccactgcctggactgccaggagtacctgtgtgataactgcgtccgt
gcccaccagagggtccggctgaccaaggatcacttcattgagaggctagctgagagcctg
caccagcaccaagcgggtcgaggcaagatcatccccatcggaggaggtggagaagggggg
ggaagcgtgggcgtctccctggcccagtcctttcactacaacttctccctgctacctttg
ttccaggacaggatgagcttctgtcagaaccacgacaacgaggtgtttctgtttttctgt
gagacgtgctcggtgccgatctgtagggagtgtagtgtgggcagacacgtgggccacagc
ttcgtctatctacaggatgctgtccaggactccagagacatcaccatccagctactggcc
gatgcacagcaaggaagacaggctgtacagctgagtatggagaaagcccaggccatagtg
gagcaggtagagatcaaggccaagttggttcagacagaggtgaagaacatcatcctcaga
cacaagaaagccctggaggagagagagtgtcagctactctggagggttgagaagatccgc
cagctgaaagccaagtctctgtacctgcaggtagagaagctgcatcagaacctgaccaag
ctggacagcaccattgcagccgtcactcaggtgctcgacgagggccgtcacctggacgtg
ctgctggccagagagcgcatgctgacccagatccaggagctcaagtctctcagaggcctg
ctgcagtcacaggaagacgacaggttcatgttcatgcctccagatcaggccctgtacata
gccatccagtccatggggctgatcagtagcggagcgttcgctaccgtcaccaaagctcat
ggagagggcctaaagaccgcactccgcggcaagcctgcctccttcaccgtgattggctac
gaccatgacggggagccccgcctctcgggcggtgacgcggtgtcagcagtagtgatggca
gcagtggatggtaacctgtcggctgccgaggtgtgtgaccacctgaacgggtcatacaca
gtcagctatctgcccaaagcagagggagaatatctggtgtcagttctggtctgtaaccag
cacatcatgggtagcccctttaaggtgctggtgaagtctgggcggagctatggcgccctg
gggtccccggtgtctgcattcggtggtgagggggagggggaggggcagctgtgtcgcccc
tgggggatcagcgtggacaaggagggatacgtggtcgtggccgaccgcagtaacaaccgc
gtacagatctttaagccgtgcggtgccttctaccacaagtttggctccctgggttctcgc
cccggtcagtttgaccgtccagcgggcgtggcatgcgacagccaacgccgaatcatcgtg
gcggacaaagacaaccaccgcgtgcaggtgttcactttcgacgggcagttcatgctcaag
ttcggcgagaagggcactaagaacgggcagttcaactacccctgggatgtggcggtgaat
tctgcagggaagatactggtctctgacaccaggaaccaccgtgtccagctctttggccct
gatgggtccttcatcaacaagtacggctttgaaggcgctctgtggaaacactttgactca
ccgcgcggcgtcgccttcaaccacgaggaccacctggtcgtcaccgacttcaacaaccat
cgtctgctggtgatccggccggactgccagtctgcccggttcttgggctcagagggaacc
ggtaacgggcagttcctgcgtccgcagggcgtggctgtggaccaggagaaccggatcatc
gtggctgactcgaggaaccaccgggtgcaggtattcgagcccaacgggaacttcttatgt
aaatttggtatgcaagggagtggctttggacagatggaccgcccctccggtgttgccgtg
acgcctgacggagtcatcgtggtcgtcgattttggaaacaaccgcatcctcaagttttga
DBGET
integrated database retrieval system
