Oncorhynchus nerka (sockeye salmon): 115128612
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Entry
115128612 CDS
T07952
Symbol
sdc3
Name
(RefSeq) syndecan-3
KO
K16337
syndecan 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04514
Cell adhesion molecule (CAM) interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
115128612 (sdc3)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115128612 (sdc3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
one00535
]
115128612 (sdc3)
Proteoglycans [BR:
one00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
115128612 (sdc3)
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Ortholog
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GFIT
Motif
Pfam:
Syndecan
SDH8
Motif
Other DBs
NCBI-GeneID:
115128612
NCBI-ProteinID:
XP_029514445
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Position
LG4:complement(56231373..56267085)
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AA seq
432 aa
AA seq
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MKLPPCLMTILAALLAHSALGQTWVPSIDLEGPSGDEFYDDEDLFSGSGSGFPEMKVNPT
AVGVSFSTEEPLPLSTTQATGPAPSAPPAAEPNPNPDALPTPLPTEGEGESGIEWERGRE
RERERERERVREMERERDREREREKEREREKERERERERERQREIERERERERERARAAQ
TTISPRGPAAVPMATTSTATPLAESVAPSSGVQDLVTTEEEDEDVYLSPDSTTSMPMETT
TEEEEEEVTTTDTETTPLPKTTAPPTTIGPALTERSSSAPFRPSVLVTTPIKAAPTERST
RPQQPSTTMNNELGVNGPSGDFEIREEDRRQGNEVVGRGLGMETGAEPDLIGNTINTGSS
AAQLPQKNILERKEVLIAVIVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEEPKQATVT
YQKADKQEEFYA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccgccgtgtctgatgacgatcctcgcggcgctgctcgctcactccgcgctg
ggtcagacctgggttccgtctatagatctagaaggtccttctggagatgagttctatgat
gatgaagacctcttctcaggctctggatctggctttccagagatgaaggtcaaccctaca
gcggtgggtgtgtctttcagcactgaggagccccttcccctttccaccacccaggctact
ggccccgccccctcagccccacctgcagccgagcccaatcccaaccccgacgctctcccc
accccactacccactgagggagagggggagagtgggatagagtgggagagagggagggag
agagagagggagagggaaagagagagagtaagggagatggagcgggagagggatagagag
agggagagagaaaaggagagggagagagaaaaggagagggagagagaaagagagagagag
aggcaacgggaaatagagagggaacgagaaagagaacgtgaaagagcgagagccgcccag
accaccatctcaccccgtggcccggcggctgttcccatggcgaccaccagcacagcgacg
cctctggcggagagtgtagcaccctctagtggcgtgcaggacctggtcaccacagaagaa
gaggacgaggatgtctacctgtccccagactccaccaccagtatgcctatggagaccacc
acggaagaagaagaggaagaagtgaccactacagatacagagaccacacccctcccaaag
acaacagctccacccactacgattggaccagccctaactgagaggtctagctccgccccc
tttaggcccagtgttctggtgaccacgcctattaaagccgcacccacagagaggagcaca
cgcccacagcagccttctacgacaatgaataatgaattaggggttaatggacccagcgga
gactttgagatccgggaggaggaccgtcgccagggcaacgaggttgttggtcgtggcctt
ggcatggagactggggcagaacctgatctgattggcaacacaattaacacaggaagttct
gccgctcaacttcctcagaagaacatcttggagaggaaggaggttctgatagcggtgata
gtggggggcgtggtgggggccctgtttgcagcgttcctggtcatgctgctggtgtacagg
atgaagaagaaagatgaaggcagctacacactggaggaacccaagcaagccaccgtcacc
taccagaaagctgacaaacaggaggagttctacgcataa
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